CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra035247.1-P	Field mustard	plastid	99.29	99.29
CDX86812	Canola	mitochondrion, plastid	97.16	97.16
CDY61889	Canola	mitochondrion, plastid	97.16	97.16
AT4G11175.1	Thale cress	mitochondrion, plastid	87.94	87.94
HORVU0Hr1G035290.1	Barley	cytosol	24.82	46.05
HORVU0Hr1G037630.1	Barley	cytosol	24.82	46.05
HORVU0Hr1G034480.1	Barley	cytosol	24.82	46.05
HORVU0Hr1G025190.1	Barley	cytosol	24.82	46.05
HORVU0Hr1G024630.1	Barley	cytosol	24.82	46.05
HORVU3Hr1G110940.1	Barley	cytosol	20.57	43.94
HORVU0Hr1G026200.1	Barley	cytosol	33.33	43.93
HORVU6Hr1G037250.1	Barley	cytosol	33.33	43.93
HORVU5Hr1G064730.1	Barley	cytosol	33.33	43.93
HORVU0Hr1G037950.1	Barley	cytosol	33.33	43.93
HORVU0Hr1G037370.1	Barley	cytosol	33.33	43.93
HORVU0Hr1G036980.1	Barley	cytosol	33.33	43.93
GRMZM5G830210_P01	Maize	plastid	33.33	43.93
HORVU0Hr1G033710.1	Barley	cytosol	33.33	43.93
HORVU0Hr1G033440.1	Barley	cytosol	33.33	43.93
HORVU0Hr1G032930.1	Barley	cytosol	33.33	43.93
HORVU0Hr1G028370.1	Barley	cytosol	33.33	43.93
HORVU0Hr1G026810.1	Barley	cytosol	33.33	43.93
HORVU0Hr1G026270.1	Barley	cytosol	33.33	43.93
CAA33930	Rice	cytosol	32.62	42.99
TraesCS1A01G130000.1	Wheat	cytosol	31.21	41.9
AGP50789	Barley	cytosol	33.33	41.59
TraesCS3A01G454200.1	Wheat	cytosol	32.62	41.44
TraesCS5B01G312400.1	Wheat	cytosol	32.62	41.07
TraesCS3A01G431900.1	Wheat	cytosol	31.91	40.54
KRH03161	Soybean	nucleus	38.3	39.13
HORVU7Hr1G107570.1	Barley	cytosol	29.08	38.68
HORVU5Hr1G070820.1	Barley	peroxisome	20.57	38.67
KRH56784	Soybean	nucleus	37.59	37.06
PGSC0003DMT400019914	Potato	extracellular, mitochondrion, plastid	38.3	34.84
Solyc12g098350.1.1	Tomato	plastid	36.88	33.33

Protein Annotations

MapMan:17.7.3.2	Gene3D:2.40.50.140	GO:A0A078DC20	EnsemblPlants:CDX86811	ProteinID:CDX86811	ProteinID:CDX86811.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0006412
GO:GO:0006413	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00145553001	InterPro:IPR006196	HAMAP:MF_00075	InterPro:NA-bd_OB-fold	PFAM:PF01176
PFscan:PS50832	PANTHER:PTHR33370	InterPro:RNA-binding_domain_S1_IF1	InterPro:S1_dom	SMART:SM00316	SUPFAM:SSF50249
InterPro:TIF_IF1	TIGRFAMs:TIGR00008	UniParc:UPI0004EF1471	:	:	:

Description

BnaA09g22010D

Coordinates

chrLK031847:-:939760..940827

Molecular Weight (calculated)

15673.3 Da

IEP (calculated)

11.046

GRAVY (calculated)

-0.243

Length

141 amino acids

Sequence
(BLAST)

001: MLQLCSTFRP QLLFSPQIRF TDGVLIPRLN FGSSNPVVSF RPVIRCQRVS GGRGGANRSK PAKPPVKEGS NKTVIEGLVT ESLPNGMFRV DLENGDNILG
101: YICGKIRKNF IRILPGDKVK VEMSVYDSTK GRIVFRMSSR D

Best Arabidopsis Sequence Match ( AT4G11175.1 )
(BLAST)

001: MLQLCSTFRP QLLLPCQFRF TNGVLIPQIN YVASNSVVNI RPMIRCQRAS GGRGGANRSK PAKPQVKEGS NKTVIEGLVT ESLPNGMFRV DLENGDNILG
101: YICGKIRKNF IRILPGDKVK VEMSVYDSTK GRIIFRMSSR D

Arabidopsis Description

Translation initiation factor IF-1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O82499]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.