CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH03161	Soybean	nucleus	80.42	83.33
HORVU0Hr1G037630.1	Barley	cytosol	27.27	51.32
HORVU0Hr1G024630.1	Barley	cytosol	27.27	51.32
HORVU0Hr1G025190.1	Barley	cytosol	27.27	51.32
HORVU0Hr1G035290.1	Barley	cytosol	27.27	51.32
HORVU0Hr1G034480.1	Barley	cytosol	27.27	51.32
CAA33930	Rice	cytosol	35.66	47.66
HORVU0Hr1G026810.1	Barley	cytosol	34.97	46.73
HORVU5Hr1G064730.1	Barley	cytosol	34.97	46.73
HORVU0Hr1G037950.1	Barley	cytosol	34.97	46.73
HORVU0Hr1G037370.1	Barley	cytosol	34.97	46.73
HORVU0Hr1G036980.1	Barley	cytosol	34.97	46.73
HORVU0Hr1G033710.1	Barley	cytosol	34.97	46.73
HORVU0Hr1G033440.1	Barley	cytosol	34.97	46.73
HORVU0Hr1G032930.1	Barley	cytosol	34.97	46.73
HORVU0Hr1G028370.1	Barley	cytosol	34.97	46.73
HORVU0Hr1G026270.1	Barley	cytosol	34.97	46.73
HORVU0Hr1G026200.1	Barley	cytosol	34.97	46.73
HORVU6Hr1G037250.1	Barley	cytosol	34.97	46.73
TraesCS1A01G130000.1	Wheat	cytosol	34.27	46.67
GRMZM5G830210_P01	Maize	plastid	34.27	45.79
TraesCS3A01G431900.1	Wheat	cytosol	34.97	45.05
TraesCS3A01G454200.1	Wheat	cytosol	34.97	45.05
TraesCS5B01G312400.1	Wheat	cytosol	34.97	44.64
AGP50789	Barley	cytosol	34.97	44.25
HORVU3Hr1G110940.1	Barley	cytosol	20.28	43.94
Bra040979.1-P	Field mustard	cytosol, nucleus	25.17	43.9
HORVU5Hr1G070820.1	Barley	peroxisome	21.68	41.33
HORVU7Hr1G107570.1	Barley	cytosol	28.67	38.68
CDY61889	Canola	mitochondrion, plastid	37.76	38.3
CDX86812	Canola	mitochondrion, plastid	37.76	38.3
PGSC0003DMT400019914	Potato	extracellular, mitochondrion, plastid	41.26	38.06
Solyc12g098350.1.1	Tomato	plastid	41.26	37.82
CDX86811	Canola	plastid	37.06	37.59
AT4G11175.1	Thale cress	mitochondrion, plastid	37.06	37.59

Protein Annotations

EntrezGene:100805978	MapMan:17.7.3.2	Gene3D:2.40.50.140	EMBL:ACUP02002797	EnsemblPlantsGene:GLYMA_05G019600	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006412	GO:GO:0006413	GO:GO:0008135
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0043022
UniProt:I1JZH0	InterPro:IPR006196	EnsemblPlants:KRH56784	ProteinID:KRH56784	ProteinID:KRH56784.1	HAMAP:MF_00075
InterPro:NA-bd_OB-fold	PFAM:PF01176	PFscan:PS50832	PANTHER:PTHR33370	InterPro:RNA-binding_domain_S1_IF1	InterPro:S1_dom
SMART:SM00316	SUPFAM:SSF50249	InterPro:TIF_IF1	TIGRFAMs:TIGR00008	UniParc:UPI0002339F66	SEG:seg

Description

hypothetical protein

Coordinates

chr5:+:1744899..1745840

Molecular Weight (calculated)

16028.5 Da

IEP (calculated)

10.814

GRAVY (calculated)

-0.330

Length

143 amino acids

Sequence
(BLAST)

001: MFPSSSPTSL HTPILHHRYC HHPTPSRTQF SPLTLPPFRH TLSFLVPPPL LPAARAIPAA SAAKGDKSGE QKWVLEGLVM ESLPNGMFRV RLDNEDLILG
101: YISGKIRKNY VRILPGDRVK VEVTRYDSSK GRIVYRLRSS TPS

Best Arabidopsis Sequence Match ( AT4G11175.1 )
(BLAST)

001: MLQLCSTFRP QLLLPCQFRF TNGVLIPQIN YVASNSVVNI RPMIRCQRAS GGRGGANRSK PAKPQVKEGS NKTVIEGLVT ESLPNGMFRV DLENGDNILG
101: YICGKIRKNF IRILPGDKVK VEMSVYDSTK GRIIFRMSSR D

Arabidopsis Description

Translation initiation factor IF-1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O82499]
SUBAcon: [plastid,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.