CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU0Hr1G037630.1	Barley	cytosol	67.26	100.0
HORVU0Hr1G037370.1	Barley	cytosol	94.69	100.0
HORVU0Hr1G028370.1	Barley	cytosol	94.69	100.0
HORVU0Hr1G024630.1	Barley	cytosol	67.26	100.0
HORVU0Hr1G025190.1	Barley	cytosol	67.26	100.0
HORVU6Hr1G037250.1	Barley	cytosol	91.15	96.26
HORVU0Hr1G033710.1	Barley	cytosol	91.15	96.26
HORVU0Hr1G033440.1	Barley	cytosol	91.15	96.26
HORVU0Hr1G032930.1	Barley	cytosol	91.15	96.26
HORVU0Hr1G026810.1	Barley	cytosol	91.15	96.26
HORVU0Hr1G026270.1	Barley	cytosol	91.15	96.26
HORVU0Hr1G026200.1	Barley	cytosol	91.15	96.26
HORVU0Hr1G036980.1	Barley	cytosol	91.15	96.26
HORVU0Hr1G037950.1	Barley	cytosol	91.15	96.26
HORVU5Hr1G064730.1	Barley	cytosol	91.15	96.26
HORVU0Hr1G034480.1	Barley	cytosol	63.72	94.74
HORVU0Hr1G035290.1	Barley	cytosol	63.72	94.74
Bra040979.1-P	Field mustard	cytosol, nucleus	67.26	92.68
GRMZM5G830210_P01	Maize	plastid	87.61	92.52
CAA33930	Rice	cytosol	87.61	92.52
TraesCS3A01G454200.1	Wheat	cytosol	89.38	90.99
HORVU3Hr1G110940.1	Barley	cytosol	39.82	68.18
HORVU7Hr1G107570.1	Barley	cytosol	61.06	65.09
HORVU5Hr1G070820.1	Barley	peroxisome	35.4	53.33
KRH03161	Soybean	nucleus	43.36	35.51
KRH56784	Soybean	nucleus	44.25	34.97
PGSC0003DMT400019914	Potato	extracellular, mitochondrion, plastid	47.79	34.84
AT4G11175.1	Thale cress	mitochondrion, plastid	42.48	34.04
CDX86811	Canola	plastid	41.59	33.33
Solyc12g098350.1.1	Tomato	plastid	45.13	32.69
CDY61889	Canola	mitochondrion, plastid	40.71	32.62
CDX86812	Canola	mitochondrion, plastid	40.71	32.62

Protein Annotations

MapMan:17.7.3.2	Gene3D:2.40.50.140	EntrezGene:4525109	EnsemblPlants:AGP50789	EnsemblPlantsGene:AGP50789	ProteinID:AGP50789
ProteinID:AGP50789.1	ProteinID:AMA20280.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006412
GO:GO:0006413	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0019538	GO:GO:0019843	GO:GO:0043022	InterPro:IPR006196
ENA:KC912687.1:CDS:complement(76256..76597)	HAMAP:MF_00075	InterPro:NA-bd_OB-fold	PFAM:PF01176	PFscan:PS50832	PANTHER:PTHR33370
InterPro:RNA-binding_domain_S1_IF1	InterPro:S1_dom	GO:S4YYM7	UniProt:S4YYM7	SMART:SM00316	SUPFAM:SSF50249
InterPro:TIF_IF1	TIGRFAMs:TIGR00008	UniParc:UPI0000231E59	RefSeq:YP_874687.1	SEG:seg	:

Description

infAtranslational initiation factor 1

Coordinates

chrPt:-:76256..76597

Molecular Weight (calculated)

13116.7 Da

IEP (calculated)

10.237

GRAVY (calculated)

-1.058

Length

113 amino acids

Sequence
(BLAST)

001: MTEKKNRREK KNPREAKVTF EGLVTEALPN GMFRVRLEND TIILGYISGK IRSSSIRILM GDRVKIEVSR YDSSKGRIIY RLPHKDSKRI EDSKDSEDLK
101: DSEDLKNTKD SKD

Best Arabidopsis Sequence Match ( AT4G11175.1 )
(BLAST)

001: MLQLCSTFRP QLLLPCQFRF TNGVLIPQIN YVASNSVVNI RPMIRCQRAS GGRGGANRSK PAKPQVKEGS NKTVIEGLVT ESLPNGMFRV DLENGDNILG
101: YICGKIRKNF IRILPGDKVK VEMSVYDSTK GRIIFRMSSR D

Arabidopsis Description

Translation initiation factor IF-1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O82499]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.