CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 10
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56784	Soybean	nucleus	83.33	80.42
HORVU0Hr1G037630.1	Barley	cytosol	28.26	51.32
HORVU0Hr1G024630.1	Barley	cytosol	28.26	51.32
HORVU0Hr1G025190.1	Barley	cytosol	28.26	51.32
HORVU0Hr1G035290.1	Barley	cytosol	28.26	51.32
HORVU0Hr1G034480.1	Barley	cytosol	28.26	51.32
CAA33930	Rice	cytosol	36.23	46.73
HORVU0Hr1G028370.1	Barley	cytosol	35.51	45.79
HORVU6Hr1G037250.1	Barley	cytosol	35.51	45.79
HORVU5Hr1G064730.1	Barley	cytosol	35.51	45.79
HORVU0Hr1G037950.1	Barley	cytosol	35.51	45.79
HORVU0Hr1G037370.1	Barley	cytosol	35.51	45.79
HORVU0Hr1G036980.1	Barley	cytosol	35.51	45.79
HORVU0Hr1G033710.1	Barley	cytosol	35.51	45.79
HORVU0Hr1G033440.1	Barley	cytosol	35.51	45.79
HORVU0Hr1G032930.1	Barley	cytosol	35.51	45.79
HORVU0Hr1G026810.1	Barley	cytosol	35.51	45.79
HORVU0Hr1G026270.1	Barley	cytosol	35.51	45.79
HORVU0Hr1G026200.1	Barley	cytosol	35.51	45.79
TraesCS1A01G130000.1	Wheat	cytosol	34.78	45.71
GRMZM5G830210_P01	Maize	plastid	34.78	44.86
TraesCS3A01G431900.1	Wheat	cytosol	35.51	44.14
Bra040979.1-P	Field mustard	cytosol, nucleus	26.09	43.9
AGP50789	Barley	cytosol	35.51	43.36
TraesCS3A01G454200.1	Wheat	cytosol	34.78	43.24
TraesCS5B01G312400.1	Wheat	cytosol	34.78	42.86
HORVU3Hr1G110940.1	Barley	cytosol	20.29	42.42
HORVU5Hr1G070820.1	Barley	peroxisome	22.46	41.33
CDY61889	Canola	mitochondrion, plastid	39.86	39.01
CDX86812	Canola	mitochondrion, plastid	39.86	39.01
CDX86811	Canola	plastid	39.13	38.3
Solyc12g098350.1.1	Tomato	plastid	42.75	37.82
HORVU7Hr1G107570.1	Barley	cytosol	28.99	37.74
AT4G11175.1	Thale cress	mitochondrion, plastid	38.41	37.59
PGSC0003DMT400019914	Potato	extracellular, mitochondrion, plastid	42.03	37.42

Protein Annotations

MapMan:17.7.3.2	Gene3D:2.40.50.140	EntrezGene:547999	UniProt:A0A0R0FJK8	EMBL:AF347666	EnsemblPlantsGene:GLYMA_17G080200
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006412	GO:GO:0006413
GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536
GO:GO:0009987	GO:GO:0019538	GO:GO:0043022	InterPro:IPR006196	EnsemblPlants:KRH03161	ProteinID:KRH03161
ProteinID:KRH03161.1	HAMAP:MF_00075	InterPro:NA-bd_OB-fold	PFAM:PF01176	PFscan:PS50832	PANTHER:PTHR33370
UniProt:Q94KR7	InterPro:RNA-binding_domain_S1_IF1	InterPro:S1_dom	SMART:SM00316	SUPFAM:SSF50249	InterPro:TIF_IF1
TIGRFAMs:TIGR00008	UniParc:UPI00000A6B85	SEG:seg	:	:	:

Description

infAhypothetical protein

Coordinates

chr17:-:6216557..6217601

Molecular Weight (calculated)

15430.8 Da

IEP (calculated)

10.339

GRAVY (calculated)

-0.274

Length

138 amino acids

Sequence
(BLAST)

001: MFTSLHTPIL HPRYCHHPTP SCTQFSPLAL PPFHRTLSFL APPPLLPAAP ALSAASAAKP DKSGEQKWVH EGLIMESLPN GMFRVRLDNE DLILGYISGK
101: IRKNYVRILP GDRVKVEVTR YDSSKGRIVY RLRSSTPS

Best Arabidopsis Sequence Match ( AT4G11175.1 )
(BLAST)

001: MLQLCSTFRP QLLLPCQFRF TNGVLIPQIN YVASNSVVNI RPMIRCQRAS GGRGGANRSK PAKPQVKEGS NKTVIEGLVT ESLPNGMFRV DLENGDNILG
101: YICGKIRKNF IRILPGDKVK VEMSVYDSTK GRIIFRMSSR D

Arabidopsis Description

Translation initiation factor IF-1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O82499]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.