Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU0Hr1G037630.1 | Barley | cytosol | 66.67 | 97.37 |
| HORVU0Hr1G025190.1 | Barley | cytosol | 66.67 | 97.37 |
| HORVU0Hr1G024630.1 | Barley | cytosol | 66.67 | 97.37 |
| HORVU0Hr1G035290.1 | Barley | cytosol | 63.96 | 93.42 |
| HORVU0Hr1G034480.1 | Barley | cytosol | 63.96 | 93.42 |
| Bra040979.1-P | Field mustard | cytosol, nucleus | 68.47 | 92.68 |
| TraesCS3A01G454200.1 | Wheat | cytosol | 90.99 | 90.99 |
| TraesCS5B01G312400.1 | Wheat | cytosol | 90.99 | 90.18 |
| TraesCS1A01G130000.1 | Wheat | cytosol | 80.18 | 84.76 |
| GRMZM5G830210_P01 | Maize | plastid | 80.18 | 83.18 |
| CAA33930 | Rice | cytosol | 80.18 | 83.18 |
| KRH03161 | Soybean | nucleus | 44.14 | 35.51 |
| KRH56784 | Soybean | nucleus | 45.05 | 34.97 |
| PGSC0003DMT400019914 | Potato | extracellular, mitochondrion, plastid | 45.95 | 32.9 |
| Solyc12g098350.1.1 | Tomato | plastid | 45.95 | 32.69 |
| AT4G11175.1 | Thale cress | mitochondrion, plastid | 41.44 | 32.62 |
| CDX86811 | Canola | plastid | 40.54 | 31.91 |
| CDY61889 | Canola | mitochondrion, plastid | 39.64 | 31.21 |
| CDX86812 | Canola | mitochondrion, plastid | 39.64 | 31.21 |
Protein Annotations
| MapMan:17.7.3.2 | Gene3D:2.40.50.140 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003743 |
| GO:GO:0005488 | GO:GO:0006412 | GO:GO:0006413 | GO:GO:0008135 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | InterPro:IPR006196 | HAMAP:MF_00075 | InterPro:NA-bd_OB-fold |
| PFAM:PF01176 | PFscan:PS50832 | PANTHER:PTHR33370 | InterPro:RNA-binding_domain_S1_IF1 | SUPFAM:SSF50249 | InterPro:TIF_IF1 |
| TIGRFAMs:TIGR00008 | EnsemblPlantsGene:TraesCS3A01G431900 | EnsemblPlants:TraesCS3A01G431900.1 | TIGR:cd04451 | SEG:seg | : |
Description
No Description!
Coordinates
chr3A:+:672915410..672915745
Molecular Weight (calculated)
13034.6 Da
IEP (calculated)
9.956
GRAVY (calculated)
-0.992
Length
111 amino acids
Sequence
(BLAST)
(BLAST)
001: MTEKNRREKK PREAKVTFEG LVMEALPNGM FRVRLENDTI ILGYISGKIR SSSIRILMWD RVKIEVSRYD SSKGRIIYRL PHKDSKRIED SKDSEDLKDS
101: EDLKDTKDSK D
101: EDLKDTKDSK D
001: MLQLCSTFRP QLLLPCQFRF TNGVLIPQIN YVASNSVVNI RPMIRCQRAS GGRGGANRSK PAKPQVKEGS NKTVIEGLVT ESLPNGMFRV DLENGDNILG
101: YICGKIRKNF IRILPGDKVK VEMSVYDSTK GRIIFRMSSR D
101: YICGKIRKNF IRILPGDKVK VEMSVYDSTK GRIIFRMSSR D
Arabidopsis Description
Translation initiation factor IF-1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O82499]
SUBAcon: [mitochondrion,plastid]
SUBAcon: [mitochondrion,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.