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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 9
  • mitochondrion 2
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX86811 Canola plastid 99.29 99.29
CDX86812 Canola mitochondrion, plastid 97.87 97.87
CDY61889 Canola mitochondrion, plastid 97.87 97.87
AT4G11175.1 Thale cress mitochondrion, plastid 88.65 88.65
Bra040979.1-P Field mustard cytosol, nucleus 21.99 37.8
Protein Annotations
MapMan:17.7.3.2Gene3D:2.40.50.140EnsemblPlantsGene:Bra035247EnsemblPlants:Bra035247.1EnsemblPlants:Bra035247.1-PGO:GO:0003674
GO:GO:0003676GO:GO:0003723GO:GO:0003743GO:GO:0005488GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0006412GO:GO:0006413GO:GO:0008135GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009507GO:GO:0009536GO:GO:0009987GO:GO:0019538
InterPro:IPR006196UniProt:M4F2E9HAMAP:MF_00075InterPro:NA-bd_OB-foldPFAM:PF01176PFscan:PS50832
PANTHER:PTHR33370InterPro:RNA-binding_domain_S1_IF1InterPro:S1_domSMART:SM00316SUPFAM:SSF50249InterPro:TIF_IF1
TIGRFAMs:TIGR00008UniParc:UPI0002546B1E::::
Description
AT4G11175 (E=1e-068) | translation initiation factor IF-1, chloroplast, putative
Coordinates
chrA08:-:9562229..9562875
Molecular Weight (calculated)
15663.2 Da
IEP (calculated)
11.046
GRAVY (calculated)
-0.237
Length
141 amino acids
Sequence
(BLAST)
001: MLQLCSTFRP QLLFSPQIRF TDGVLIPRLN FGSSNSVVSF RPVIRCQRVS GGRGGANRSK PAKPPVKEGS NKTVIEGLVT ESLPNGMFRV DLENGDNILG
101: YICGKIRKNF IRILPGDKVK VEMSVYDSTK GRIVFRMSSR D
Best Arabidopsis Sequence Match ( AT4G11175.1 )
(BLAST)
001: MLQLCSTFRP QLLLPCQFRF TNGVLIPQIN YVASNSVVNI RPMIRCQRAS GGRGGANRSK PAKPQVKEGS NKTVIEGLVT ESLPNGMFRV DLENGDNILG
101: YICGKIRKNF IRILPGDKVK VEMSVYDSTK GRIIFRMSSR D
Arabidopsis Description
Translation initiation factor IF-1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O82499]
SUBAcon: [mitochondrion,plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.