Factsheet for Zm00001d022141_P007

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d002027_P002
Zm00001d018533_P003

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G16980.1	Zm00001d002027_P002	AT1G22920.1	21798944
AT3G16980.1	Zm00001d018533_P003	AT3G19895.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU90254	Sorghum	nucleus	57.22	97.37
Os07t0615800-00	Rice	nucleus	50.0	83.62
TraesCS2D01G176400.1	Wheat	cytosol, mitochondrion, nucleus	44.85	76.32
TraesCS2A01G168800.1	Wheat	cytosol, mitochondrion, nucleus	44.85	76.32
HORVU5Hr1G013420.1	Barley	nucleus	27.84	75.0
TraesCS2B01G195100.1	Wheat	nucleus	43.81	74.56
HORVU2Hr1G031100.1	Barley	cytosol	18.56	73.47
Zm00001d009215_P001	Maize	nucleus	6.7	72.22
GSMUA_Achr4P24050_001	Banana	nucleus	36.6	62.28
AT3G16980.1	Thale cress	nucleus	34.54	58.77
Bra033550.1-P	Field mustard	nucleus	34.54	58.77
Bra040570.1-P	Field mustard	nucleus	34.54	58.77
CDY42543	Canola	nucleus	34.54	58.77
CDY72355	Canola	nucleus	34.54	58.77
HORVU2Hr1G031050.2	Barley	cytosol, nucleus	31.44	52.14
Zm00001d041609_P001	Maize	nucleus	30.41	51.75
CDX99562	Canola	nucleus	29.38	51.35
CDX86852	Canola	nucleus	32.47	48.09
AT4G16265.2	Thale cress	extracellular	31.44	45.86
Zm00001d004409_P002	Maize	nucleus	23.71	40.71
CDY32231	Canola	cytosol, nucleus, plastid	23.2	39.13
Zm00001d004096_P001	Maize	cytosol, nucleus	13.92	32.53

Protein Annotations

EntrezGene:100285329	MapMan:15.1.6.7	Gene3D:2.20.25.10	UniProt:A0A1D6IJK5	InterPro:DNA-dir_RNA_pol-M_15_CS	InterPro:DNA-dir_RNA_pol_M/15kDasu
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0006139
GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	GO:GO:0046872	InterPro:IPR001222	ProteinID:ONM59623.1	PFAM:PF02150	ScanProsite:PS01030
PFscan:PS51133	PANTHER:PTHR11239	PANTHER:PTHR11239:SF16	SMART:SM00661	SUPFAM:SSF57783	UniParc:UPI000844E5E1
EnsemblPlantsGene:Zm00001d022141	EnsemblPlants:Zm00001d022141_P007	EnsemblPlants:Zm00001d022141_T007	InterPro:Znf_TFIIS	:	:

Description

DNA-directed RNA polymerase subunit

Coordinates

chr7:-:171059061..171061553

Molecular Weight (calculated)

22092.3 Da

IEP (calculated)

8.165

GRAVY (calculated)

-0.596

Length

194 amino acids

Sequence
(BLAST)

001: MFHWHAGSRW PTYQEPRIEK GTEGRKKSSR AAVAGRRESQ DSGRGEATMS TLKFCRECNN MLYPREDKET RTLLYACQTC EHEEIATDTC VYKRVIRKPG
101: GEPKDVLKDA ATDPSLPRTR SVRCYNCNHP EAAFFQVCTQ VLFTCCRLIF VALEFCAVTC NADTLSPQAP TKGEQAMTLY FICCNPSCGH RWRD

Best Arabidopsis Sequence Match ( AT3G16980.1 )
(BLAST)

001: MSTMKFCREC NNILYPKEDK EQKILLYACR NCDHQEVADN SCVYRNEVHH SVSERTQILT DVASDPTLPR TKAVRCSKCQ HREAVFFQAT ARGEEGMTLF
101: FVCCNPNCGH RWRE

Arabidopsis Description

NRPB9ADNA-directed RNA polymerases II, IV and V subunit 9A [Source:UniProtKB/Swiss-Prot;Acc:Q6NLH0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.