Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- nucleus 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d009215_P001 | Maize | nucleus | 15.93 | 100.0 |
| EES11806 | Sorghum | nucleus | 70.8 | 70.18 |
| EES19658 | Sorghum | nucleus | 69.91 | 69.3 |
| Zm00001d004096_P001 | Maize | cytosol, nucleus | 46.9 | 63.86 |
| Os03t0102200-01 | Rice | cytosol, mitochondrion, nucleus | 62.83 | 62.28 |
| TraesCS4B01G374000.1 | Wheat | nucleus | 62.83 | 62.28 |
| TraesCS5A01G540000.1 | Wheat | nucleus | 61.95 | 61.4 |
| KRH36994 | Soybean | nucleus | 61.06 | 60.53 |
| PGSC0003DMT400069978 | Potato | mitochondrion | 61.06 | 60.53 |
| Solyc05g053430.2.1 | Tomato | nucleus | 61.06 | 60.53 |
| GSMUA_Achr10P... | Banana | nucleus | 60.18 | 59.65 |
| KRH11971 | Soybean | nucleus | 60.18 | 59.65 |
| VIT_05s0077g01170.t01 | Wine grape | nucleus | 60.18 | 59.65 |
| Zm00001d041609_P001 | Maize | nucleus | 53.1 | 52.63 |
| KRH50750 | Soybean | nucleus | 47.79 | 47.37 |
| Zm00001d022141_P007 | Maize | nucleus | 40.71 | 23.71 |
Protein Annotations
| MapMan:15.1.6.7 | Gene3D:2.20.25.10 | UniProt:A0A1D6EF90 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 |
| GO:GO:0003899 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006379 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0046872 |
| InterPro:IPR001222 | ProteinID:ONM18859.1 | PFAM:PF01096 | PFscan:PS51133 | PANTHER:PTHR11239 | PANTHER:PTHR11239:SF15 |
| SMART:SM00440 | SUPFAM:SSF57783 | UniParc:UPI0008441D95 | EnsemblPlantsGene:Zm00001d004409 | EnsemblPlants:Zm00001d004409_P002 | EnsemblPlants:Zm00001d004409_T002 |
| InterPro:Zn_ribbon_RPB9_C | InterPro:Znf_TFIIS | : | : | : | : |
Description
DNA-directed RNA polymerase subunit
Coordinates
chr2:+:110207246..110210898
Molecular Weight (calculated)
12583.8 Da
IEP (calculated)
7.149
GRAVY (calculated)
-0.469
Length
113 amino acids
Sequence
(BLAST)
(BLAST)
001: MSQLRASGQQ IFTLLHHAYQ GALEASPQRH LGAKEVSDNN CVYRNEVHHT AGERTQVLQD VASDPTLPRT KTVRCNLCGH GEAVFFQAAA RGEEGMTLFF
101: VCCSPDCGHR WRE
101: VCCSPDCGHR WRE
001: MFSIGLKLQL FSTFAAYEPL ILFFFEMFSN NILYPKEDKE QSILLYACRN CDHQEAADNN CVYRNEVHHS VSEQTQILSD VASDPTLPRT KAVRCAKCQH
101: GEAVFFQATA RGEEGMTLFF VCCNPNCSHR WRE
101: GEAVFFQATA RGEEGMTLFF VCCNPNCSHR WRE
Arabidopsis Description
NRPB9BRNA polymerases M/15 Kd subunit [Source:TAIR;Acc:AT4G16265]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.