CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400069978	Potato	mitochondrion	74.56	74.56
Solyc05g053430.2.1	Tomato	nucleus	74.56	74.56
GSMUA_Achr10P...	Banana	nucleus	73.68	73.68
KRH36994	Soybean	nucleus	73.68	73.68
KRH11971	Soybean	nucleus	71.93	71.93
TraesCS4B01G374000.1	Wheat	nucleus	67.54	67.54
TraesCS5A01G540000.1	Wheat	nucleus	67.54	67.54
EES11806	Sorghum	nucleus	63.16	63.16
EES19658	Sorghum	nucleus	63.16	63.16
Os03t0102200-01	Rice	cytosol, mitochondrion, nucleus	63.16	63.16
Zm00001d004409_P002	Maize	nucleus	47.37	47.79

Protein Annotations

EntrezGene:100806190	MapMan:15.1.6.7	Gene3D:2.20.25.10	EMBL:ACUP02004715	InterPro:DNA-dir_RNA_pol_M/15kDasu	EnsemblPlantsGene:GLYMA_07G241200
GO:GO:0001193	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005665
GO:GO:0005730	GO:GO:0006139	GO:GO:0006259	GO:GO:0006283	GO:GO:0006351	GO:GO:0006367
GO:GO:0006379	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058
GO:GO:0009987	GO:GO:0016740	GO:GO:0046872	UniProt:I1KMS4	InterPro:IPR001222	EnsemblPlants:KRH50750
ProteinID:KRH50750	ProteinID:KRH50750.1	PFAM:PF01096	PFAM:PF02150	PIRSF:PIRSF005586	PFscan:PS51133
PANTHER:PTHR11239	PANTHER:PTHR11239:SF15	InterPro:Rpa12/Rpb9/Rpc10/TFS	SMART:SM00440	SMART:SM00661	SUPFAM:SSF57783
UniParc:UPI0002338AB7	InterPro:Zn_ribbon_RPB9_C	InterPro:Znf_TFIIS	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:42136407..42139345

Molecular Weight (calculated)

13229.8 Da

IEP (calculated)

8.328

GRAVY (calculated)

-0.625

Length

114 amino acids

Sequence
(BLAST)

001: MSSMKFCRRC NNVLYPTEDK EEKLLLYACR NCNHEEIADS NVVYRNKIHH SVQRRTRELE NVAADPTLPR TKSVRCSQCN HGEAVFFKAP VKGEEGMALI
101: FVCCNPTCGY RWRD

Best Arabidopsis Sequence Match ( AT3G16980.1 )
(BLAST)

001: MSTMKFCREC NNILYPKEDK EQKILLYACR NCDHQEVADN SCVYRNEVHH SVSERTQILT DVASDPTLPR TKAVRCSKCQ HREAVFFQAT ARGEEGMTLF
101: FVCCNPNCGH RWRE

Arabidopsis Description

NRPB9ADNA-directed RNA polymerases II, IV and V subunit 9A [Source:UniProtKB/Swiss-Prot;Acc:Q6NLH0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.