CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

nucleus: 21132161
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11971	Soybean	nucleus	96.49	96.49
VIT_05s0077g01170.t01	Wine grape	nucleus	92.98	92.98
GSMUA_Achr10P...	Banana	nucleus	89.47	89.47
TraesCS5A01G540000.1	Wheat	nucleus	82.46	82.46
EES11806	Sorghum	nucleus	81.58	81.58
EES19658	Sorghum	nucleus	81.58	81.58
TraesCS4B01G374000.1	Wheat	nucleus	81.58	81.58
Os03t0102200-01	Rice	cytosol, mitochondrion, nucleus	78.95	78.95
KRH50750	Soybean	nucleus	73.68	73.68
Zm00001d004409_P002	Maize	nucleus	60.53	61.06

Protein Annotations

EntrezGene:100305979	MapMan:15.1.6.7	Gene3D:2.20.25.10	EMBL:ACUP02005406	EMBL:BT089849	UniProt:C6SXF5
InterPro:DNA-dir_RNA_pol-M_15_CS	InterPro:DNA-dir_RNA_pol_M/15kDasu	EnsemblPlantsGene:GLYMA_09G037400	GO:GO:0001193	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005654	GO:GO:0005665	GO:GO:0005730	GO:GO:0006139	GO:GO:0006259
GO:GO:0006283	GO:GO:0006351	GO:GO:0006367	GO:GO:0006379	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0046872
InterPro:IPR001222	EnsemblPlants:KRH36994	ProteinID:KRH36994	ProteinID:KRH36994.1	PFAM:PF01096	PFAM:PF02150
PIRSF:PIRSF005586	ScanProsite:PS01030	PFscan:PS51133	PANTHER:PTHR11239	PANTHER:PTHR11239:SF15	InterPro:Rpa12/Rpb9/Rpc10/TFS
SMART:SM00440	SMART:SM00661	SUPFAM:SSF57783	UniParc:UPI00019624F7	InterPro:Zn_ribbon_RPB9_C	InterPro:Znf_TFIIS

Description

hypothetical protein

Coordinates

chr9:-:3134229..3136954

Molecular Weight (calculated)

13160.6 Da

IEP (calculated)

6.960

GRAVY (calculated)

-0.547

Length

114 amino acids

Sequence
(BLAST)

001: MSAMKFCREC NNILYPKEDR DQKVLLFACR NCDHQEVADN FCVYRNEIHH SVGERTQVLQ DVAADPTLPR TKSVRCSQCN HGEAVFFQAT ARGEEGMTLF
101: FVCCNPNCGH RWRD

Best Arabidopsis Sequence Match ( AT3G16980.1 )
(BLAST)

001: MSTMKFCREC NNILYPKEDK EQKILLYACR NCDHQEVADN SCVYRNEVHH SVSERTQILT DVASDPTLPR TKAVRCSKCQ HREAVFFQAT ARGEEGMTLF
101: FVCCNPNCGH RWRE

Arabidopsis Description

NRPB9ADNA-directed RNA polymerases II, IV and V subunit 9A [Source:UniProtKB/Swiss-Prot;Acc:Q6NLH0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.