Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES19658 | Sorghum | nucleus | 86.84 | 86.84 |
| TraesCS4B01G374000.1 | Wheat | nucleus | 86.84 | 86.84 |
| EES11806 | Sorghum | nucleus | 85.96 | 85.96 |
| TraesCS5A01G540000.1 | Wheat | nucleus | 84.21 | 84.21 |
| PGSC0003DMT400069978 | Potato | mitochondrion | 79.82 | 79.82 |
| Solyc05g053430.2.1 | Tomato | nucleus | 79.82 | 79.82 |
| KRH36994 | Soybean | nucleus | 78.95 | 78.95 |
| VIT_05s0077g01170.t01 | Wine grape | nucleus | 78.95 | 78.95 |
| KRH11971 | Soybean | nucleus | 78.07 | 78.07 |
| GSMUA_Achr10P... | Banana | nucleus | 77.19 | 77.19 |
| Os12t0560400-01 | Rice | nucleus | 62.28 | 68.27 |
| KRH50750 | Soybean | nucleus | 63.16 | 63.16 |
| Zm00001d004409_P002 | Maize | nucleus | 62.28 | 62.83 |
| Os07t0615800-00 | Rice | nucleus | 54.39 | 53.45 |
| Os11t0676650-00 | Rice | cytosol, nucleus | 32.46 | 46.25 |
Protein Annotations
| MapMan:15.1.6.7 | Gene3D:2.20.25.10 | EntrezGene:4331295 | ProteinID:ABF93490.1 | EMBL:AK120183 | ProteinID:BAF10574.1 |
| ProteinID:BAS81832.1 | InterPro:DNA-dir_RNA_pol-M_15_CS | InterPro:DNA-dir_RNA_pol_M/15kDasu | ProteinID:EEE58148.1 | GO:GO:0001193 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005665 | GO:GO:0005730 | GO:GO:0006139 |
| GO:GO:0006259 | GO:GO:0006283 | GO:GO:0006351 | GO:GO:0006367 | GO:GO:0006379 | GO:GO:0006950 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 |
| GO:GO:0046872 | InterPro:IPR001222 | EnsemblPlantsGene:Os03g0102200 | EnsemblPlants:Os03t0102200-01 | PFAM:PF01096 | PFAM:PF02150 |
| PIRSF:PIRSF005586 | ScanProsite:PS01030 | PFscan:PS51133 | PANTHER:PTHR11239 | PANTHER:PTHR11239:SF15 | UniProt:Q10T38 |
| InterPro:Rpa12/Rpb9/Rpc10/TFS | SMART:SM00440 | SMART:SM00661 | SUPFAM:SSF57783 | UniParc:UPI0000DB4820 | RefSeq:XP_015629296.1 |
| InterPro:Zn_ribbon_RPB9_C | InterPro:Znf_TFIIS | : | : | : | : |
Description
similar to DNA-directed RNA polymeraseSimilar to DNA-directed RNA polymerase II 14.5 kDa polypeptide (EC 2.7.7.6) (RPB9) (RPB14.5). (Os03t0102200-01)
Coordinates
chr3:+:148195..149009
Molecular Weight (calculated)
13051.6 Da
IEP (calculated)
7.625
GRAVY (calculated)
-0.431
Length
114 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTMKFCREC NNILYPKEEK DRRLLLFACR NCEHQEVSES KCVYRNEVAH AAGERTQVLQ DVASDPTLPR TKTVRCAACG HGEAVFFQAT ARGEEGMTLF
101: FVCCNLTCAH RWRE
101: FVCCNLTCAH RWRE
001: MSTMKFCREC NNILYPKEDK EQSILLYACR NCDHQEAADN NCVYRNEVHH SVSEQTQILS DVASDPTLPR TKAVRCAKCQ HGEAVFFQAT ARGEEGMTLF
101: FVCCNPNCSH RWRE
101: FVCCNPNCSH RWRE
Arabidopsis Description
NRPB9BRNA polymerases M/15 Kd subunit [Source:TAIR;Acc:AT4G16265]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.