Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400069978 | Potato | mitochondrion | 100.0 | 100.0 |
| GSMUA_Achr10P... | Banana | nucleus | 90.35 | 90.35 |
| TraesCS4B01G374000.1 | Wheat | nucleus | 82.46 | 82.46 |
| TraesCS5A01G540000.1 | Wheat | nucleus | 82.46 | 82.46 |
| EES11806 | Sorghum | nucleus | 79.82 | 79.82 |
| EES19658 | Sorghum | nucleus | 79.82 | 79.82 |
| Os03t0102200-01 | Rice | cytosol, mitochondrion, nucleus | 79.82 | 79.82 |
| KRH50750 | Soybean | nucleus | 74.56 | 74.56 |
| Zm00001d004409_P002 | Maize | nucleus | 60.53 | 61.06 |
Protein Annotations
| MapMan:15.1.6.7 | Gene3D:2.20.25.10 | InterPro:DNA-dir_RNA_pol-M_15_CS | InterPro:DNA-dir_RNA_pol_M/15kDasu | GO:GO:0001193 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005665 | GO:GO:0005730 | GO:GO:0006139 |
| GO:GO:0006259 | GO:GO:0006283 | GO:GO:0006351 | GO:GO:0006367 | GO:GO:0006379 | GO:GO:0006950 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 |
| GO:GO:0046872 | InterPro:IPR001222 | UniProt:K4C223 | PFAM:PF01096 | PFAM:PF02150 | PIRSF:PIRSF005586 |
| ScanProsite:PS01030 | PFscan:PS51133 | PANTHER:PTHR11239 | PANTHER:PTHR11239:SF15 | InterPro:Rpa12/Rpb9/Rpc10/TFS | SMART:SM00440 |
| SMART:SM00661 | SUPFAM:SSF57783 | EnsemblPlantsGene:Solyc05g053430.2 | EnsemblPlants:Solyc05g053430.2.1 | UniParc:UPI0002766309 | InterPro:Zn_ribbon_RPB9_C |
| InterPro:Znf_TFIIS | : | : | : | : | : |
Description
DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:K4C223]
Coordinates
chr5:-:63513356..63517359
Molecular Weight (calculated)
13114.5 Da
IEP (calculated)
6.960
GRAVY (calculated)
-0.678
Length
114 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTMKFCREC NNILYPKEDK EQKILLYACR NCDHQEPAEN NCVYRNEIHH SAAERTQVLQ DVAADPTLPR TKSVRCSQCG HGEAVFFQAT ARGEEGMTLF
101: FVCCNPNCGH RWRD
101: FVCCNPNCGH RWRD
001: MSTMKFCREC NNILYPKEDK EQKILLYACR NCDHQEVADN SCVYRNEVHH SVSERTQILT DVASDPTLPR TKAVRCSKCQ HREAVFFQAT ARGEEGMTLF
101: FVCCNPNCGH RWRE
101: FVCCNPNCGH RWRE
Arabidopsis Description
NRPB9ADNA-directed RNA polymerases II, IV and V subunit 9A [Source:UniProtKB/Swiss-Prot;Acc:Q6NLH0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.