Factsheet for PGSC0003DMT400069978

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g053430.2.1	Tomato	nucleus	100.0	100.0
GSMUA_Achr10P...	Banana	nucleus	90.35	90.35
TraesCS4B01G374000.1	Wheat	nucleus	82.46	82.46
TraesCS5A01G540000.1	Wheat	nucleus	82.46	82.46
EES11806	Sorghum	nucleus	79.82	79.82
EES19658	Sorghum	nucleus	79.82	79.82
Os03t0102200-01	Rice	cytosol, mitochondrion, nucleus	79.82	79.82
KRH50750	Soybean	nucleus	74.56	74.56
Zm00001d004409_P002	Maize	nucleus	60.53	61.06

Protein Annotations

EntrezGene:102580987	MapMan:15.1.6.7	Gene3D:2.20.25.10	InterPro:DNA-dir_RNA_pol-M_15_CS	InterPro:DNA-dir_RNA_pol_M/15kDasu	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0006139	GO:GO:0006351	GO:GO:0006379
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740
GO:GO:0046872	InterPro:IPR001222	UniProt:M1CLI8	PFAM:PF01096	PFAM:PF02150	EnsemblPlantsGene:PGSC0003DMG400027213
PGSC:PGSC0003DMG400027213	EnsemblPlants:PGSC0003DMT400069978	PIRSF:PIRSF005586	ScanProsite:PS01030	PFscan:PS51133	PANTHER:PTHR11239
PANTHER:PTHR11239:SF15	InterPro:Rpa12/Rpb9/Rpc10/TFS	SMART:SM00440	SMART:SM00661	SUPFAM:SSF57783	UniParc:UPI0002766309
RefSeq:XP_006355736.1	InterPro:Zn_ribbon_RPB9_C	InterPro:Znf_TFIIS	:	:	:

Description

DNA-directed RNA polymerase subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400027213]

Coordinates

chr5:-:48679282..48683357

Molecular Weight (calculated)

13114.5 Da

IEP (calculated)

6.960

GRAVY (calculated)

-0.678

Length

114 amino acids

Sequence
(BLAST)

001: MSTMKFCREC NNILYPKEDK EQKILLYACR NCDHQEPAEN NCVYRNEIHH SAAERTQVLQ DVAADPTLPR TKSVRCSQCG HGEAVFFQAT ARGEEGMTLF
101: FVCCNPNCGH RWRD

Best Arabidopsis Sequence Match ( AT3G16980.1 )
(BLAST)

001: MSTMKFCREC NNILYPKEDK EQKILLYACR NCDHQEVADN SCVYRNEVHH SVSERTQILT DVASDPTLPR TKAVRCSKCQ HREAVFFQAT ARGEEGMTLF
101: FVCCNPNCGH RWRE

Arabidopsis Description

NRPB9ADNA-directed RNA polymerases II, IV and V subunit 9A [Source:UniProtKB/Swiss-Prot;Acc:Q6NLH0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.