Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os02t0829600-01 | |
| Os04t0654700-02 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G16980.1 | Os04t0654700-02 | AT1G22920.1 | 21798944 |
| AT3G16980.1 | Os02t0829600-01 | AT3G19895.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU90254 | Sorghum | nucleus | 82.76 | 84.21 |
| TraesCS2D01G176400.1 | Wheat | cytosol, mitochondrion, nucleus | 80.17 | 81.58 |
| TraesCS2A01G168800.1 | Wheat | cytosol, mitochondrion, nucleus | 80.17 | 81.58 |
| HORVU5Hr1G013420.1 | Barley | nucleus | 50.0 | 80.56 |
| TraesCS2B01G195100.1 | Wheat | nucleus | 78.45 | 79.82 |
| HORVU2Hr1G031100.1 | Barley | cytosol | 32.76 | 77.55 |
| GSMUA_Achr4P24050_001 | Banana | nucleus | 57.76 | 58.77 |
| AT3G16980.1 | Thale cress | nucleus | 56.03 | 57.02 |
| Bra033550.1-P | Field mustard | nucleus | 56.03 | 57.02 |
| Bra040570.1-P | Field mustard | nucleus | 56.03 | 57.02 |
| CDY42543 | Canola | nucleus | 56.03 | 57.02 |
| CDY72355 | Canola | nucleus | 56.03 | 57.02 |
| Os03t0102200-01 | Rice | cytosol, mitochondrion, nucleus | 53.45 | 54.39 |
| HORVU2Hr1G031050.2 | Barley | cytosol, nucleus | 51.72 | 51.28 |
| Zm00001d022141_P007 | Maize | nucleus | 83.62 | 50.0 |
| CDX99562 | Canola | nucleus | 47.41 | 49.55 |
| Os12t0560400-01 | Rice | nucleus | 40.52 | 45.19 |
| CDX86852 | Canola | nucleus | 50.86 | 45.04 |
| AT4G16265.2 | Thale cress | extracellular | 50.86 | 44.36 |
| CDY32231 | Canola | cytosol, nucleus, plastid | 40.52 | 40.87 |
| Os11t0676650-00 | Rice | cytosol, nucleus | 24.14 | 35.0 |
Protein Annotations
| MapMan:15.1.6.7 | Gene3D:2.20.25.10 | EntrezGene:4343902 | ProteinID:BAC16509.1 | ProteinID:BAC21480.1 | ProteinID:BAT02647.1 |
| InterPro:DNA-dir_RNA_pol_M/15kDasu | GO:GO:0001193 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0003899 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 |
| GO:GO:0005665 | GO:GO:0005730 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006283 | GO:GO:0006351 |
| GO:GO:0006367 | GO:GO:0006379 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0046872 | InterPro:IPR001222 | EnsemblPlantsGene:Os07g0615800 |
| EnsemblPlants:Os07t0615800-00 | PFAM:PF01096 | PFAM:PF02150 | PIRSF:PIRSF005586 | PFscan:PS51133 | PANTHER:PTHR11239 |
| PANTHER:PTHR11239:SF16 | UniProt:Q8GSD5 | InterPro:Rpa12/Rpb9/Rpc10/TFS | SMART:SM00440 | SMART:SM00661 | SUPFAM:SSF57783 |
| UniParc:UPI00000AE4A4 | RefSeq:XP_015647354.1 | InterPro:Zn_ribbon_RPB9_C | InterPro:Znf_TFIIS | : | : |
Description
DNA-directed RNA polymerase, M/15 kDa subunit domain containing protein. (Os07t0615800-00)
Coordinates
chr7:-:25369462..25371807
Molecular Weight (calculated)
13094.7 Da
IEP (calculated)
7.886
GRAVY (calculated)
-0.585
Length
116 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMSALKFCG ECSNMLYPRE DKETHTLLYA CNSCEHQEPA TDTCVYKRVL RKPAGEPKDI LKDAATDPTL PRTRSIKCYN CGHPEAAFFQ APTKGEKGLT
101: LYFICCNPSC GHRWRD
101: LYFICCNPSC GHRWRD
001: MSTMKFCREC NNILYPKEDK EQKILLYACR NCDHQEVADN SCVYRNEVHH SVSERTQILT DVASDPTLPR TKAVRCSKCQ HREAVFFQAT ARGEEGMTLF
101: FVCCNPNCGH RWRE
101: FVCCNPNCGH RWRE
Arabidopsis Description
NRPB9ADNA-directed RNA polymerases II, IV and V subunit 9A [Source:UniProtKB/Swiss-Prot;Acc:Q6NLH0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.