Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- mitochondrion 2
- nucleus 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d009215_P001 | Maize | nucleus | 13.91 | 88.89 |
| Bra033550.1-P | Field mustard | nucleus | 73.04 | 73.68 |
| CDY42543 | Canola | nucleus | 72.17 | 72.81 |
| CDY72355 | Canola | nucleus | 72.17 | 72.81 |
| CDX99562 | Canola | nucleus | 59.13 | 61.26 |
| AT4G16265.2 | Thale cress | extracellular | 70.43 | 60.9 |
| GSMUA_Achr1P01580_001 | Banana | cytosol, nucleus, plastid | 59.13 | 59.13 |
| CDX86852 | Canola | nucleus | 62.61 | 54.96 |
| GSMUA_Achr4P24050_001 | Banana | nucleus | 48.7 | 49.12 |
| HORVU5Hr1G013420.1 | Barley | nucleus | 30.43 | 48.61 |
| HORVU2Hr1G031100.1 | Barley | cytosol | 20.0 | 46.94 |
| Os07t0615800-00 | Rice | nucleus | 40.87 | 40.52 |
| OQU90254 | Sorghum | nucleus | 40.0 | 40.35 |
| TraesCS2A01G168800.1 | Wheat | cytosol, mitochondrion, nucleus | 37.39 | 37.72 |
| TraesCS2B01G195100.1 | Wheat | nucleus | 37.39 | 37.72 |
| TraesCS2D01G176400.1 | Wheat | cytosol, mitochondrion, nucleus | 37.39 | 37.72 |
| HORVU2Hr1G031050.2 | Barley | cytosol, nucleus | 27.83 | 27.35 |
| Zm00001d022141_P007 | Maize | nucleus | 39.13 | 23.2 |
Protein Annotations
| MapMan:15.1.6.7 | Gene3D:2.20.25.10 | GO:A0A078H351 | UniProt:A0A078H351 | EnsemblPlants:CDY32231 | ProteinID:CDY32231 |
| ProteinID:CDY32231.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006379 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0046872 | EnsemblPlantsGene:GSBRNA2T00051669001 | InterPro:IPR001222 | PFAM:PF01096 | PFscan:PS51133 | PANTHER:PTHR11239 |
| PANTHER:PTHR11239:SF15 | SMART:SM00440 | SUPFAM:SSF57783 | UniParc:UPI0004EEEB10 | InterPro:Zn_ribbon_RPB9_C | InterPro:Znf_TFIIS |
Description
BnaA01g17530DBnaA01g17530D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H351]
Coordinates
chrLK032290:-:146652..152347
Molecular Weight (calculated)
13117.6 Da
IEP (calculated)
7.444
GRAVY (calculated)
-0.277
Length
115 amino acids
Sequence
(BLAST)
(BLAST)
001: MHVVVTVEKV HAMKKESNLF RVHPLVSFVG YCYCWQEAAD NNCVYRNEVH HSVSEQTQIL SDVASDPTLP RTKAVRCAKC QHGEAVFFQA TARGEEGMTL
101: FFVCCNPNCG HRWRE
101: FFVCCNPNCG HRWRE
001: MFSIGLKLQL FSTFAAYEPL ILFFFEMFSN NILYPKEDKE QSILLYACRN CDHQEAADNN CVYRNEVHHS VSEQTQILSD VASDPTLPRT KAVRCAKCQH
101: GEAVFFQATA RGEEGMTLFF VCCNPNCSHR WRE
101: GEAVFFQATA RGEEGMTLFF VCCNPNCSHR WRE
Arabidopsis Description
NRPB9BRNA polymerases M/15 Kd subunit [Source:TAIR;Acc:AT4G16265]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.