Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d002027_P002 | |
| Zm00001d018533_P003 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G16980.1 | Zm00001d002027_P002 | AT1G22920.1 | 21798944 |
| AT3G16980.1 | Zm00001d018533_P003 | AT3G19895.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d004409_P002 | Maize | nucleus | 100.0 | 15.93 |
| AT3G16980.1 | Thale cress | nucleus | 88.89 | 14.04 |
| Bra033550.1-P | Field mustard | nucleus | 88.89 | 14.04 |
| Bra040570.1-P | Field mustard | nucleus | 88.89 | 14.04 |
| CDY42543 | Canola | nucleus | 88.89 | 14.04 |
| CDY72355 | Canola | nucleus | 88.89 | 14.04 |
| CDY32231 | Canola | cytosol, nucleus, plastid | 88.89 | 13.91 |
| GSMUA_Achr1P01580_001 | Banana | cytosol, nucleus, plastid | 88.89 | 13.91 |
| AT4G16265.2 | Thale cress | extracellular | 83.33 | 11.28 |
| CDX86852 | Canola | nucleus | 72.22 | 9.92 |
| CDX99562 | Canola | nucleus | 61.11 | 9.91 |
| Zm00001d022141_P007 | Maize | nucleus | 72.22 | 6.7 |
| Zm00001d041609_P001 | Maize | nucleus | 22.22 | 3.51 |
| Zm00001d004096_P001 | Maize | cytosol, nucleus | 5.56 | 1.2 |
Protein Annotations
| Gene3D:2.20.25.10 | MapMan:35.2 | UniProt:A0A1D6FI80 | ProteinID:AQK91505.1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 | InterPro:IPR001222 |
| PFAM:PF01096 | SUPFAM:SSF57783 | UniParc:UPI0008443718 | EnsemblPlantsGene:Zm00001d009215 | EnsemblPlants:Zm00001d009215_P001 | EnsemblPlants:Zm00001d009215_T001 |
| InterPro:Znf_TFIIS | : | : | : | : | : |
Description
DNA-directed RNA polymerases II IV and V subunit 9A
Coordinates
chr8:-:44141913..44160833
Molecular Weight (calculated)
2187.7 Da
IEP (calculated)
7.181
GRAVY (calculated)
-0.033
Length
18 amino acids
Sequence
(BLAST)
(BLAST)
1: MTLFFVCCSP DCGHRWRE
001: MSTMKFCREC NNILYPKEDK EQKILLYACR NCDHQEVADN SCVYRNEVHH SVSERTQILT DVASDPTLPR TKAVRCSKCQ HREAVFFQAT ARGEEGMTLF
101: FVCCNPNCGH RWRE
101: FVCCNPNCGH RWRE
Arabidopsis Description
NRPB9ADNA-directed RNA polymerases II, IV and V subunit 9A [Source:UniProtKB/Swiss-Prot;Acc:Q6NLH0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.