Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY42543 | Canola | nucleus | 100.0 | 100.0 |
| CDY72355 | Canola | nucleus | 100.0 | 100.0 |
| Bra033550.1-P | Field mustard | nucleus | 98.25 | 98.25 |
| Zm00001d009215_P001 | Maize | nucleus | 14.04 | 88.89 |
| GSMUA_Achr1P01580_001 | Banana | cytosol, nucleus, plastid | 79.82 | 79.13 |
| AT4G16265.2 | Thale cress | extracellular | 91.23 | 78.2 |
| GSMUA_Achr4P24050_001 | Banana | nucleus | 71.93 | 71.93 |
| OQU90254 | Sorghum | nucleus | 59.65 | 59.65 |
| Os07t0615800-00 | Rice | nucleus | 57.02 | 56.03 |
| TraesCS2B01G195100.1 | Wheat | nucleus | 54.39 | 54.39 |
| TraesCS2A01G168800.1 | Wheat | cytosol, mitochondrion, nucleus | 53.51 | 53.51 |
| TraesCS2D01G176400.1 | Wheat | cytosol, mitochondrion, nucleus | 53.51 | 53.51 |
| HORVU5Hr1G013420.1 | Barley | nucleus | 30.7 | 48.61 |
| HORVU2Hr1G031100.1 | Barley | cytosol | 20.18 | 46.94 |
| HORVU2Hr1G031050.2 | Barley | cytosol, nucleus | 37.72 | 36.75 |
| Zm00001d022141_P007 | Maize | nucleus | 58.77 | 34.54 |
Protein Annotations
| MapMan:15.1.6.7 | Gene3D:2.20.25.10 | EnsemblPlantsGene:Bra040570 | EnsemblPlants:Bra040570.1 | EnsemblPlants:Bra040570.1-P | InterPro:DNA-dir_RNA_pol-M_15_CS |
| InterPro:DNA-dir_RNA_pol_M/15kDasu | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005730 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006379 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016740 | GO:GO:0046872 | InterPro:IPR001222 | UniProt:M4FHJ2 | PFAM:PF01096 |
| PFAM:PF02150 | PIRSF:PIRSF005586 | ScanProsite:PS01030 | PFscan:PS51133 | PANTHER:PTHR11239 | PANTHER:PTHR11239:SF15 |
| InterPro:Rpa12/Rpb9/Rpc10/TFS | SMART:SM00440 | SMART:SM00661 | SUPFAM:SSF57783 | UniParc:UPI000253EE1E | InterPro:Zn_ribbon_RPB9_C |
| InterPro:Znf_TFIIS | : | : | : | : | : |
Description
AT4G16265 (E=8e-066) NRPB9B, NRPD9B, NRPE9B | NRPB9B; DNA binding / DNA-directed RNA polymerase/ nucleic acid binding / transcription regulator/ zinc ion binding
Coordinates
chrScaffold000219:+:3650..4669
Molecular Weight (calculated)
13106.4 Da
IEP (calculated)
6.328
GRAVY (calculated)
-0.604
Length
114 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTMKFCREC NNILYPKEDR EQSILLYACR NCDHQEAADD NCVYRNEVHH SVSEQTQILS DVASDPTLPR TKAVRCAKCQ HGEAVFFQAT ARGEEGMTLF
101: FVCCNPNCGH RWRE
101: FVCCNPNCGH RWRE
001: MSTMKFCREC NNILYPKEDK EQSILLYACR NCDHQEAADN NCVYRNEVHH SVSEQTQILS DVASDPTLPR TKAVRCAKCQ HGEAVFFQAT ARGEEGMTLF
101: FVCCNPNCSH RWRE
101: FVCCNPNCSH RWRE
Arabidopsis Description
NRPB9BRNA polymerases M/15 Kd subunit [Source:TAIR;Acc:AT4G16265]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.