Factsheet for GSMUA_Achr1P01580_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 4
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr1P14940_001
GSMUA_Achr4P11710_001
GSMUA_Achr4P11720_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G16980.1	GSMUA_Achr10P...	AT1G22920.1	21798944
AT3G16980.1	GSMUA_Achr4P11710_001	AT3G19895.1	21798944
AT3G16980.1	GSMUA_Achr4P11720_001	AT3G19895.1	21798944
AT3G16980.1	GSMUA_Achr1P14940_001	AT4G35780.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d009215_P001	Maize	nucleus	13.91	88.89
AT3G16980.1	Thale cress	nucleus	84.35	85.09
GSMUA_Achr10P...	Banana	nucleus	81.74	82.46
Bra033550.1-P	Field mustard	nucleus	80.0	80.7
Bra040570.1-P	Field mustard	nucleus	79.13	79.82
CDY42543	Canola	nucleus	79.13	79.82
CDY72355	Canola	nucleus	79.13	79.82
GSMUA_Achr7P05620_001	Banana	nucleus	70.43	71.05
CDX99562	Canola	nucleus	66.96	69.37
GSMUA_Achr4P24050_001	Banana	nucleus	68.7	69.3
CDX86852	Canola	nucleus	72.17	63.36
AT4G16265.2	Thale cress	extracellular	73.04	63.16
CDY32231	Canola	cytosol, nucleus, plastid	59.13	59.13

Protein Annotations

MapMan:15.1.6.7	Gene3D:2.20.25.10	InterPro:DNA-dir_RNA_pol-M_15_CS	InterPro:DNA-dir_RNA_pol_M/15kDasu	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005730	GO:GO:0006139	GO:GO:0006351	GO:GO:0006379	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0046872
EnsemblPlantsGene:GSMUA_Achr1G01580_001	EnsemblPlants:GSMUA_Achr1P01580_001	EnsemblPlants:GSMUA_Achr1T01580_001	InterPro:IPR001222	UniProt:M0RW66	PFAM:PF01096
PFAM:PF02150	PIRSF:PIRSF005586	ScanProsite:PS01030	PFscan:PS51133	PANTHER:PTHR11239	PANTHER:PTHR11239:SF15
InterPro:Rpa12/Rpb9/Rpc10/TFS	SMART:SM00440	SMART:SM00661	SUPFAM:SSF57783	UniParc:UPI00029606D7	InterPro:Zn_ribbon_RPB9_C
InterPro:Znf_TFIIS	:	:	:	:	:

Description

DNA-directed RNA polymerase II subunit RPB9 [Source:GMGC_GENE;Acc:GSMUA_Achr1G01580_001]

Coordinates

chr1:-:1301563..1306183

Molecular Weight (calculated)

13271.8 Da

IEP (calculated)

7.897

GRAVY (calculated)

-0.578

Length

115 amino acids

Sequence
(BLAST)

001: MSTMKFCREC NNILYPKEDK ERKVLLFACR NCYHQEVADY SCVYRNEVHH TASERTQVLQ DVAADPTLPR TKAVKCSKCN HPEAAFFQAA SRGEEGMTLF
101: FVCCNPSCGH RWRES

Best Arabidopsis Sequence Match ( AT3G16980.1 )
(BLAST)

001: MSTMKFCREC NNILYPKEDK EQKILLYACR NCDHQEVADN SCVYRNEVHH SVSERTQILT DVASDPTLPR TKAVRCSKCQ HREAVFFQAT ARGEEGMTLF
101: FVCCNPNCGH RWRE

Arabidopsis Description

NRPB9ADNA-directed RNA polymerases II, IV and V subunit 9A [Source:UniProtKB/Swiss-Prot;Acc:Q6NLH0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.