Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 4
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra033550.1-P | Field mustard | nucleus | 79.7 | 92.98 |
| Bra040570.1-P | Field mustard | nucleus | 78.2 | 91.23 |
| CDY42543 | Canola | nucleus | 78.2 | 91.23 |
| CDY72355 | Canola | nucleus | 78.2 | 91.23 |
| AT3G16980.1 | Thale cress | nucleus | 74.44 | 86.84 |
| Zm00001d009215_P001 | Maize | nucleus | 11.28 | 83.33 |
| GSMUA_Achr1P01580_001 | Banana | cytosol, nucleus, plastid | 63.16 | 73.04 |
| CDY32231 | Canola | cytosol, nucleus, plastid | 60.9 | 70.43 |
| GSMUA_Achr4P24050_001 | Banana | nucleus | 54.89 | 64.04 |
| OQU90254 | Sorghum | nucleus | 45.86 | 53.51 |
| Os07t0615800-00 | Rice | nucleus | 44.36 | 50.86 |
| TraesCS2B01G195100.1 | Wheat | nucleus | 42.86 | 50.0 |
| TraesCS2A01G168800.1 | Wheat | cytosol, mitochondrion, nucleus | 42.11 | 49.12 |
| TraesCS2D01G176400.1 | Wheat | cytosol, mitochondrion, nucleus | 42.11 | 49.12 |
| HORVU5Hr1G013420.1 | Barley | nucleus | 25.56 | 47.22 |
| HORVU2Hr1G031100.1 | Barley | cytosol | 17.29 | 46.94 |
| HORVU2Hr1G031050.2 | Barley | cytosol, nucleus | 33.08 | 37.61 |
| Zm00001d022141_P007 | Maize | nucleus | 45.86 | 31.44 |
Protein Annotations
| MapMan:15.1.6.7 | Gene3D:2.20.25.10 | EntrezGene:827321 | UniProt:A0A1P8B3U3 | ProteinID:ANM66279.1 | ArrayExpress:AT4G16265 |
| EnsemblPlantsGene:AT4G16265 | RefSeq:AT4G16265 | TAIR:AT4G16265 | RefSeq:AT4G16265-TAIR-G | EnsemblPlants:AT4G16265.2 | InterPro:DNA-dir_RNA_pol_M/15kDasu |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005730 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006379 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016740 | GO:GO:0046872 | InterPro:IPR001222 | RefSeq:NP_001328187.1 | Symbol:NRPB9B | PFAM:PF01096 |
| PFAM:PF02150 | PIRSF:PIRSF005586 | PFscan:PS51133 | PANTHER:PTHR11239 | PANTHER:PTHR11239:SF15 | InterPro:Rpa12/Rpb9/Rpc10/TFS |
| SMART:SM00440 | SMART:SM00661 | SUPFAM:SSF57783 | UniParc:UPI000848AB9E | InterPro:Zn_ribbon_RPB9_C | InterPro:Znf_TFIIS |
Description
NRPB9BRNA polymerases M/15 Kd subunit [Source:TAIR;Acc:AT4G16265]
Coordinates
chr4:-:9202352..9203815
Molecular Weight (calculated)
15311.2 Da
IEP (calculated)
5.981
GRAVY (calculated)
-0.245
Length
133 amino acids
Sequence
(BLAST)
(BLAST)
001: MFSIGLKLQL FSTFAAYEPL ILFFFEMFSN NILYPKEDKE QSILLYACRN CDHQEAADNN CVYRNEVHHS VSEQTQILSD VASDPTLPRT KAVRCAKCQH
101: GEAVFFQATA RGEEGMTLFF VCCNPNCSHR WRE
101: GEAVFFQATA RGEEGMTLFF VCCNPNCSHR WRE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.