Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d008345_P003 | |
| Zm00001d040274_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G19895.1 | Zm00001d008345_P003 | AT4G02150.1 | 21798944 |
| AT3G19895.1 | Zm00001d040274_P001 | AT4G02150.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES07813 | Sorghum | plastid | 85.85 | 90.52 |
| TraesCS6D01G400800.1 | Wheat | cytosol, nucleus, plastid | 69.79 | 72.85 |
| TraesCS6A01G415200.1 | Wheat | cytosol, nucleus, plastid | 69.41 | 72.46 |
| HORVU6Hr1G094240.3 | Barley | nucleus, plastid | 70.36 | 69.3 |
| TraesCS7B01G331900.1 | Wheat | cytosol | 41.3 | 69.01 |
| Os02t0829600-01 | Rice | plastid | 67.5 | 67.62 |
| GSMUA_Achr4P11720_001 | Banana | cytosol | 21.03 | 62.15 |
| CDY42216 | Canola | cytosol, mitochondrion, plastid | 48.95 | 51.2 |
| PGSC0003DMT400082437 | Potato | plastid | 53.35 | 49.91 |
| Solyc04g009340.2.1 | Tomato | nucleus | 53.54 | 49.82 |
| VIT_01s0010g01230.t01 | Wine grape | plastid | 54.68 | 48.39 |
| AT3G19895.1 | Thale cress | plastid | 49.52 | 46.75 |
| Bra038238.1-P | Field mustard | plastid | 49.14 | 46.56 |
| CDY33428 | Canola | plastid | 48.95 | 46.55 |
| KRH29221 | Soybean | nucleus | 51.63 | 46.15 |
| KRH24219 | Soybean | nucleus | 51.43 | 45.83 |
| GSMUA_Achr4P11710_001 | Banana | plastid | 34.42 | 45.57 |
| Zm00001d034607_P001 | Maize | plastid | 19.31 | 29.19 |
| Zm00001d021542_P001 | Maize | cytosol | 12.43 | 24.53 |
| Zm00001d006430_P001 | Maize | cytosol | 21.41 | 21.62 |
Protein Annotations
| EnsemblPlants:Zm00001d018533_P003 | EnsemblPlants:Zm00001d018533_T003 | EnsemblPlantsGene:Zm00001d018533 | EntrezGene:100278371 | Gene3D:2.60.120.330 | Gene3D:3.30.40.10 |
| InterPro:IPNS-like | InterPro:IPR013083 | InterPro:IPR027443 | InterPro:Znf_RING/FYVE/PHD | ncoils:Coil | PANTHER:PTHR33644 |
| PANTHER:PTHR33644:SF1 | ProteinID:AQK76423.1 | SEG:seg | SUPFAM:SSF51197 | SUPFAM:SSF57850 | UniParc:UPI000844612C |
| UniProt:A0A1D6HQ68 | MapMan:35.1 | : | : | : | : |
Description
RING/U-box superfamily protein
Coordinates
chr5:-:222569518..222573939
Molecular Weight (calculated)
57325.9 Da
IEP (calculated)
8.141
GRAVY (calculated)
-0.085
Length
523 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTFPPPPPS AARSPVARVR LDHLVPFDGA FTPAYARAVE AVAASLTRHG AAAVDLPAAD AAVVRCALES ARAFFCDRSG LYVYRAGRAL DDGELSPACM
101: SDAFRCLGKT ARAALCAIAR NLRLRSDAFS HLLDDNPLPL DEVSASELMV SFSHGHPQSS QAPMVGLRPS MAEVDRGFVT LVASDHPGIE CFFIFRFLTV
201: YLLLQVCNPN GHWYPADVGS SPDVLLLLTG RALSHVTAGL RLNSQYRIIN NENRASLMFR LMPRANAILD CSPISAAGHC TPQIHRPISA SQFMDDLRAE
301: ENVYHHLEAP PESQGNFVNE PSLRSVLSDP LSGAFLEDAM VLPCGHSFGG LMLKKVLELH TIFFLKKSSQ ARCSICNGDV DEASLFPNLA LRAVATVVKM
401: EDDRRLFHNA ALRKRRKEVT EHMDAQRRNG SSKDSIELGL EAESPRAFKG VQYPFVVGER VLIMGNKRTP DKFVGKEAVV TSQCLNGWYL VKAVDSGESI
501: RLQYRSLRKA GELQVQALLQ SRR
101: SDAFRCLGKT ARAALCAIAR NLRLRSDAFS HLLDDNPLPL DEVSASELMV SFSHGHPQSS QAPMVGLRPS MAEVDRGFVT LVASDHPGIE CFFIFRFLTV
201: YLLLQVCNPN GHWYPADVGS SPDVLLLLTG RALSHVTAGL RLNSQYRIIN NENRASLMFR LMPRANAILD CSPISAAGHC TPQIHRPISA SQFMDDLRAE
301: ENVYHHLEAP PESQGNFVNE PSLRSVLSDP LSGAFLEDAM VLPCGHSFGG LMLKKVLELH TIFFLKKSSQ ARCSICNGDV DEASLFPNLA LRAVATVVKM
401: EDDRRLFHNA ALRKRRKEVT EHMDAQRRNG SSKDSIELGL EAESPRAFKG VQYPFVVGER VLIMGNKRTP DKFVGKEAVV TSQCLNGWYL VKAVDSGESI
501: RLQYRSLRKA GELQVQALLQ SRR
001: MHRQGSSPIT PSNYNAAVSI ASDVPTGLTK SPLSHAIPVS PISAAYPSGD PILMMSGTPL ARVRLSEILP YEGAPSPVYA KAVEALSVSL MRYNASVIEI
101: GSEDTALMRC GLEAARLYFR TRSLTVSGKG NRGLSMYRAG RSVEDLDSSP PCMAEIFRCL GKVARAALSA IARHLRLRSD VFNHMLDDFP LAPNEVSSSV
201: LLASYAHASI QNGKHASGGG NLSAKIEVEK GLLTLFCSDG TGIQVCDPNG RWYTADNGCG VGDLLLITGK ALSHATAGLR PAASYRTTTD HLSATDTRGR
301: ASLAFRLMPK SNAILDCSPI EAAGHVIPQS YVPVSVSQFM DNLLAENDTL VNPPVKTNVP RDDVCKEPSL RSVLSDPISG AFLEDAMVVS CGHSFGGLML
401: RRVLEMSRCT LCNTEIESGS LVPNHALRAA ASAIKQQDDK RLFHNAAMRR RRKEMSDQMD VENGDPATDD GMHRVVHYPF AVNEKVLIKG NRRTPEKFVG
501: KEAIVTSQCL NGWYLLKIVE SGDNVRLQYR SLKKMVNDDR GGGLQAQPVE SNSL
101: GSEDTALMRC GLEAARLYFR TRSLTVSGKG NRGLSMYRAG RSVEDLDSSP PCMAEIFRCL GKVARAALSA IARHLRLRSD VFNHMLDDFP LAPNEVSSSV
201: LLASYAHASI QNGKHASGGG NLSAKIEVEK GLLTLFCSDG TGIQVCDPNG RWYTADNGCG VGDLLLITGK ALSHATAGLR PAASYRTTTD HLSATDTRGR
301: ASLAFRLMPK SNAILDCSPI EAAGHVIPQS YVPVSVSQFM DNLLAENDTL VNPPVKTNVP RDDVCKEPSL RSVLSDPISG AFLEDAMVVS CGHSFGGLML
401: RRVLEMSRCT LCNTEIESGS LVPNHALRAA ASAIKQQDDK RLFHNAAMRR RRKEMSDQMD VENGDPATDD GMHRVVHYPF AVNEKVLIKG NRRTPEKFVG
501: KEAIVTSQCL NGWYLLKIVE SGDNVRLQYR SLKKMVNDDR GGGLQAQPVE SNSL
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8GWB1]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.