Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 1
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Zm00001d040274_P001 | Maize | cytosol | 96.98 | 97.16 |
KXG32187 | Sorghum | cytosol | 94.72 | 95.08 |
Os01t0253300-01 | Rice | cytosol | 88.87 | 89.54 |
TraesCS3D01G178500.1 | Wheat | cytosol | 88.3 | 89.31 |
TraesCS3A01G172000.1 | Wheat | golgi, nucleus | 88.3 | 89.31 |
HORVU3Hr1G034750.5 | Barley | cytosol | 88.3 | 87.8 |
TraesCS3B01G202800.2 | Wheat | cytosol | 83.96 | 82.87 |
VIT_07s0005g01100.t01 | Wine grape | cytosol | 81.13 | 81.29 |
PGSC0003DMT400076860 | Potato | cytosol | 80.57 | 80.72 |
PGSC0003DMT400018802 | Potato | cytosol | 78.3 | 78.75 |
Solyc06g009750.2.1 | Tomato | nucleus | 78.11 | 78.56 |
Zm00001d037606_P001 | Maize | cytosol | 77.74 | 78.03 |
Solyc08g041890.2.1 | Tomato | nucleus | 80.57 | 74.0 |
Zm00001d042015_P001 | Maize | cytosol | 23.02 | 73.49 |
Zm00001d009850_P002 | Maize | cytosol | 77.36 | 71.18 |
AT4G02150.1 | Thale cress | cytosol | 70.57 | 70.43 |
CDY01921 | Canola | cytosol | 70.19 | 70.06 |
CDX97257 | Canola | cytosol | 69.62 | 69.49 |
Bra008559.1-P | Field mustard | cytosol | 69.62 | 69.49 |
AT1G02690.2 | Thale cress | cytosol | 70.57 | 69.39 |
Bra033342.1-P | Field mustard | cytosol | 65.47 | 66.6 |
CDX89948 | Canola | cytosol | 65.28 | 66.41 |
CDY64806 | Canola | cytosol | 64.72 | 66.22 |
CDX90948 | Canola | cytosol | 63.96 | 65.44 |
Bra000891.1-P | Field mustard | cytosol | 63.77 | 65.25 |
Zm00001d040153_P004 | Maize | cytosol | 20.19 | 58.47 |
CDY15260 | Canola | cytosol | 65.47 | 44.77 |
Zm00001d022536_P008 | Maize | cytosol | 46.79 | 43.66 |
PGSC0003DMT400076768 | Potato | cytosol, extracellular, mitochondrion, plastid | 6.79 | 40.45 |
Zm00001d024033_P002 | Maize | plastid | 15.28 | 37.33 |
Zm00001d008640_P002 | Maize | plastid | 29.62 | 29.85 |
Protein Annotations
Gene3D:1.20.5.690 | Gene3D:1.25.10.10 | MapMan:23.5.1.3 | UniProt:A0A1D6FC42 | ProteinID:AQK89618.1 | InterPro:ARM-like |
InterPro:ARM-type_fold | InterPro:Arm_3 | InterPro:Armadillo | ncoils:Coil | GO:GO:0003674 | GO:GO:0005215 |
GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
GO:GO:0005737 | GO:GO:0006606 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0008565 | GO:GO:0015031 |
GO:GO:0061608 | InterPro:IPR000225 | InterPro:IPR002652 | InterPro:IPR011989 | InterPro:IPR036975 | InterPro:Importin-a_IBB |
InterPro:Importin-a_IBB_sf | InterPro:Importing_su_alpha | PFAM:PF00514 | PFAM:PF01749 | PFAM:PF16186 | PIRSF:PIRSF005673 |
PFscan:PS50176 | PFscan:PS51214 | PANTHER:PTHR23316 | PANTHER:PTHR23316:SF22 | SMART:SM00185 | SUPFAM:SSF48371 |
UniParc:UPI0008436142 | EnsemblPlantsGene:Zm00001d008345 | EnsemblPlants:Zm00001d008345_P003 | EnsemblPlants:Zm00001d008345_T003 | SEG:seg | : |
Description
Importin alpha-1b subunit%2C mRNA
Coordinates
chr8:-:5938392..5944490
Molecular Weight (calculated)
58147.6 Da
IEP (calculated)
5.041
GRAVY (calculated)
-0.248
Length
530 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLRPSERVE VRRNRYKVAV DAEEGRRRRE DNMVEIRKSR REESLLKRRR EGLQAQVPAP PSGVEKKLES LPAMVSGVYS DDNNLQLEAT TQFRKLLSIE
101: RSPPIEEVIK TGVVPRFVQS LTREDFPQLQ FEAAWALTNI ASGTSENTKA VIDHGAVPIF VKLLGSGSDD VREQAVWALG NVAGDSPKCR DLVLANGALM
201: PLLAQLNEHV KLSMLRNATW TLSNFCRGKP QPSFDQTKPA LPALARLIHS NDEEVLTDAC WALSYLSDGT NDKIQAVIEA GVCPRLVELL LTCSHPSPSV
301: LIPALRTVGN IVTGDDLQTQ CIIDHQALPR LLNLLTQNHK KSIKKEACWT ISNITAGNKD QIQAVISAGI IAPLLQLLQT AEFDIKKEAA WAISNATSGG
401: SHEQIKYLVS EGCIKPLCDL LVCPDPRIVT VCLEGLENIL KVGQHDKTMG ATGDTNVLAQ MIDEAEGLEK IENLQSHDNN EIYEKAVKLL ETYWMEEEDD
501: AMATAGEAAP AVFDFNQGGN PPAAGGLNFN
101: RSPPIEEVIK TGVVPRFVQS LTREDFPQLQ FEAAWALTNI ASGTSENTKA VIDHGAVPIF VKLLGSGSDD VREQAVWALG NVAGDSPKCR DLVLANGALM
201: PLLAQLNEHV KLSMLRNATW TLSNFCRGKP QPSFDQTKPA LPALARLIHS NDEEVLTDAC WALSYLSDGT NDKIQAVIEA GVCPRLVELL LTCSHPSPSV
301: LIPALRTVGN IVTGDDLQTQ CIIDHQALPR LLNLLTQNHK KSIKKEACWT ISNITAGNKD QIQAVISAGI IAPLLQLLQT AEFDIKKEAA WAISNATSGG
401: SHEQIKYLVS EGCIKPLCDL LVCPDPRIVT VCLEGLENIL KVGQHDKTMG ATGDTNVLAQ MIDEAEGLEK IENLQSHDNN EIYEKAVKLL ETYWMEEEDD
501: AMATAGEAAP AVFDFNQGGN PPAAGGLNFN
001: MSLRPNAKTE VRRNRYKVAV DAEEGRRRRE DNMVEIRKSK REESLQKKRR EGLQANQLPQ FAPSPVPASS TVEKKLESLP AMVGGVWSDD RSLQLEATTQ
101: FRKLLSIERS PPIEEVIDAG VVPRFVEFLT REDYPQLQFE AAWALTNIAS GTSENTKVVI EHGAVPIFVQ LLASQSDDVR EQAVWALGNV AGDSPRCRDL
201: VLGQGALIPL LSQLNEHAKL SMLRNATWTL SNFCRGKPQP PFDQVRPALP ALERLIHSTD EEVLTDACWA LSYLSDGTND KIQSVIEAGV VPRLVELLQH
301: QSPSVLIPAL RSIGNIVTGD DLQTQCVISH GALLSLLSLL THNHKKSIKK EACWTISNIT AGNRDQIQAV CEAGLICPLV NLLQNAEFDI KKEAAWAISN
401: ATSGGSPDQI KYMVEQGVVK PLCDLLVCPD PRIITVCLEG LENILKVGEA EKVTGNTGDV NFYAQLIDDA EGLEKIENLQ SHDNSEIYEK AVKILETYWL
501: EEEDETLPPG DPSAQGFQFG GGNDAAVPPG GFNFQ
101: FRKLLSIERS PPIEEVIDAG VVPRFVEFLT REDYPQLQFE AAWALTNIAS GTSENTKVVI EHGAVPIFVQ LLASQSDDVR EQAVWALGNV AGDSPRCRDL
201: VLGQGALIPL LSQLNEHAKL SMLRNATWTL SNFCRGKPQP PFDQVRPALP ALERLIHSTD EEVLTDACWA LSYLSDGTND KIQSVIEAGV VPRLVELLQH
301: QSPSVLIPAL RSIGNIVTGD DLQTQCVISH GALLSLLSLL THNHKKSIKK EACWTISNIT AGNRDQIQAV CEAGLICPLV NLLQNAEFDI KKEAAWAISN
401: ATSGGSPDQI KYMVEQGVVK PLCDLLVCPD PRIITVCLEG LENILKVGEA EKVTGNTGDV NFYAQLIDDA EGLEKIENLQ SHDNSEIYEK AVKILETYWL
501: EEEDETLPPG DPSAQGFQFG GGNDAAVPPG GFNFQ
Arabidopsis Description
IMPA2Importin subunit alpha-2 [Source:UniProtKB/Swiss-Prot;Acc:F4JL11]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.