Factsheet for Zm00001d015505_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
cytosol 1
mitochondrion 1
plastid 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
iPSORT:	secretory
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20089766
plastid: 22065420
plastid: 23198870
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d010075_P001
Zm00001d012325_P001
Zm00001d012933_P001
Zm00001d014912_P003
Zm00001d034680_P001
Zm00001d037204_P001
Zm00001d038274_P002
Zm00001d042812_P001
Zm00001d052799_P001
Zm00001d054106_P003

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24020.1	Zm00001d012933_P001	AT1G73790.1	21798944
AT2G24020.1	Zm00001d034680_P001	AT1G73790.1	21798944
AT2G24020.1	Zm00001d010075_P001	AT3G47080.1	21798944
AT2G24020.1	Zm00001d012325_P001	AT3G47080.1	21798944
AT2G24020.1	Zm00001d038274_P002	AT3G47080.1	21798944
AT2G24020.1	Zm00001d042812_P001	AT3G47080.1	21798944
AT2G24020.1	Zm00001d014912_P003	AT3G54960.1	21798944
AT2G24020.1	Zm00001d054106_P003	AT3G54960.1	21798944
AT2G24020.1	Zm00001d037204_P001	AT5G64260.1	21798944
AT2G24020.1	Zm00001d052799_P001	AT5G64260.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES04638	Sorghum	plastid	56.76	90.81
Os02t0180200-01	Rice	plasma membrane, plastid	52.7	84.32
TraesCS6B01G175800.1	Wheat	plastid	51.69	81.38
TraesCS6D01G137000.1	Wheat	plastid	51.35	80.85
TraesCS6A01G147700.1	Wheat	plastid	51.01	80.32
Zm00001d053743_P002	Maize	plastid	55.74	74.66
KRH55034	Soybean	plastid	42.23	64.1
KRH26162	Soybean	plastid	41.55	62.76
AT4G30620.1	Thale cress	plastid	37.84	62.22
GSMUA_Achr4P20470_001	Banana	plastid	40.2	61.98
CDY34804	Canola	plastid	38.18	61.75
Bra010280.1-P	Field mustard	plastid	38.18	61.75
Bra039224.1-P	Field mustard	plastid	38.18	61.75
CDX76844	Canola	plastid	38.18	61.75
CDY23248	Canola	plastid	37.84	61.54
PGSC0003DMT400020463	Potato	mitochondrion	38.18	61.41
Solyc12g009980.1.1	Tomato	plastid	38.18	61.41
VIT_11s0037g00330.t01	Wine grape	plastid	40.2	60.71
CDY55614	Canola	plastid	35.47	60.69
AT2G24020.1	Thale cress	plastid	37.16	60.44
PGSC0003DMT400067633	Potato	plastid	37.84	58.33
Solyc08g006780.2.1	Tomato	plastid	37.5	57.81
GSMUA_AchrUn_...	Banana	mitochondrion	43.58	56.58
Bra008272.1-P	Field mustard	nucleus	21.62	24.52
CDY45942	Canola	nucleus	21.62	24.52
CDY20394	Canola	nucleus	21.62	24.33

Protein Annotations

EnsemblPlants:Zm00001d015505_P001	EnsemblPlants:Zm00001d015505_T001	EnsemblPlantsGene:Zm00001d015505	Gene3D:3.30.1310.10	InterPro:IPR036894	InterPro:YbaB-like_sf
InterPro:YbaB/EbfC	ncoils:Coil	PANTHER:PTHR33449	PANTHER:PTHR33449:SF3	PFAM:PF02575	ProteinID:AQK69071.1
SEG:seg	SUPFAM:SSF82607	UniParc:UPI000842CA6C	UniProt:A0A1D6H2K7	MapMan:23.1.7.2	:

Description

Nucleoid-associated protein chloroplastic

Coordinates

chr5:+:94167247..94184406

Molecular Weight (calculated)

32271.3 Da

IEP (calculated)

10.580

GRAVY (calculated)

-0.220

Length

296 amino acids

Sequence
(BLAST)

001: MPATTIVLAC LARVTASGRS LPSLLIPSHR SHALLPRPHL LPHPRPPRLL RQLRHAPNRN LPARPPLPGS IYQISHLSSF SSNQVRFPFL STLSLVSGGR
101: WPHLPLPVAL MAPSTALAPV AFRSAFSTPL ASKPTRNRMN IEGAFCLPCS TRKRASYRPF RVYSLFGGKK DKDENGDEAP SKAGIFGNMQ NLYETVKKAQ
201: MVVQVEAVRV QKELAATEID GYCEGELIKV TLSGNQQPIR VEITEAAMEL GAEKLSGLVN DAYKDAHQRS VQAMKERMAD LAQSLGMPAG LGDGLK

Best Arabidopsis Sequence Match ( AT2G24020.1 )
(BLAST)

001: MASMAATTNF TKSMLFPFSH VSGNASLNSQ RRTWPKQYKS KNGYRSLRVN GLFGGGNKDN NSEDGQSKAG IFGNMQNMYE TVKKAQMVVQ VEAVRVQKEL
101: AAAEFDGYCA GELVKVTLSG NQQPIRTDIT EAAMELGSEK LSQLVTEAYK DAHAKSVVAM KERMSDLAQS LGMPPGLSEG MK

Arabidopsis Description

STIC2Nucleoid-associated protein At2g24020, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O82230]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.