Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 8
- cytosol 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH26162 | Soybean | plastid | 91.79 | 91.33 |
| VIT_11s0037g00330.t01 | Wine grape | plastid | 70.77 | 70.41 |
| Solyc12g009980.1.1 | Tomato | plastid | 64.62 | 68.48 |
| PGSC0003DMT400020463 | Potato | mitochondrion | 64.62 | 68.48 |
| AT4G30620.1 | Thale cress | plastid | 61.03 | 66.11 |
| CDY23248 | Canola | plastid | 61.54 | 65.93 |
| Bra010280.1-P | Field mustard | plastid | 61.54 | 65.57 |
| EES04638 | Sorghum | plastid | 62.05 | 65.41 |
| CDY55614 | Canola | plastid | 57.95 | 65.32 |
| AT2G24020.1 | Thale cress | plastid | 60.51 | 64.84 |
| Bra039224.1-P | Field mustard | plastid | 60.51 | 64.48 |
| CDX76844 | Canola | plastid | 60.51 | 64.48 |
| CDY34804 | Canola | plastid | 60.51 | 64.48 |
| GSMUA_Achr4P20470_001 | Banana | plastid | 63.08 | 64.06 |
| Os02t0180200-01 | Rice | plasma membrane, plastid | 60.51 | 63.78 |
| TraesCS6A01G147700.1 | Wheat | plastid | 58.97 | 61.17 |
| TraesCS6B01G175800.1 | Wheat | plastid | 58.97 | 61.17 |
| TraesCS6D01G137000.1 | Wheat | plastid | 58.97 | 61.17 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 65.13 | 55.7 |
| Zm00001d053743_P002 | Maize | plastid | 61.54 | 54.3 |
| Zm00001d015505_P001 | Maize | plastid | 64.1 | 42.23 |
| CDY45942 | Canola | nucleus | 37.44 | 27.97 |
| Bra008272.1-P | Field mustard | nucleus | 37.44 | 27.97 |
| CDY20394 | Canola | nucleus | 36.92 | 27.38 |
Protein Annotations
| EMBL:ACUP02003681 | EnsemblPlants:KRH55034 | EnsemblPlantsGene:GLYMA_06G225800 | Gene3D:3.30.1310.10 | InterPro:IPR036894 | InterPro:YbaB-like_sf |
| InterPro:YbaB/EbfC | ncoils:Coil | PANTHER:PTHR33449 | PANTHER:PTHR33449:SF3 | PFAM:PF02575 | ProteinID:KRH55034 |
| ProteinID:KRH55034.1 | SEG:seg | SUPFAM:SSF82607 | TIGRFAMs:TIGR00103 | UniParc:UPI00023C3B00 | UniProt:I1KDI9 |
| MapMan:23.1.7.2 | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr6:-:31516387..31526716
Molecular Weight (calculated)
21068.4 Da
IEP (calculated)
8.725
GRAVY (calculated)
-0.334
Length
195 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTAPSLTGP LSNAVGFSDW KKHAPLSASL CKLSSSSNIV DMKISRCGCR KVGHGQRCFR LYALFGGKKD NNGKSDDVPS KAGILGNMQN LYETVKKAQM
101: VVQVEAVRVQ KELAAAEFDG YCEGELVKVT LSGNQQPVRT EITEAAMELG SEKLSLLITE AYKDAHQKSV QAMKERMNDL AQSLGMPPGL SEGLK
101: VVQVEAVRVQ KELAAAEFDG YCEGELVKVT LSGNQQPVRT EITEAAMELG SEKLSLLITE AYKDAHQKSV QAMKERMNDL AQSLGMPPGL SEGLK
001: MASMAATTNF TKSMLFPFSH VSGNASLNSQ RRTWPKQYKS KNGYRSLRVN GLFGGGNKDN NSEDGQSKAG IFGNMQNMYE TVKKAQMVVQ VEAVRVQKEL
101: AAAEFDGYCA GELVKVTLSG NQQPIRTDIT EAAMELGSEK LSQLVTEAYK DAHAKSVVAM KERMSDLAQS LGMPPGLSEG MK
101: AAAEFDGYCA GELVKVTLSG NQQPIRTDIT EAAMELGSEK LSQLVTEAYK DAHAKSVVAM KERMSDLAQS LGMPPGLSEG MK
Arabidopsis Description
STIC2Nucleoid-associated protein At2g24020, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O82230]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.