Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G147700.1 | Wheat | plastid | 99.47 | 99.47 |
| TraesCS6B01G175800.1 | Wheat | plastid | 97.87 | 97.87 |
| Os02t0180200-01 | Rice | plasma membrane, plastid | 86.17 | 87.57 |
| EES04638 | Sorghum | plastid | 85.11 | 86.49 |
| Zm00001d053743_P002 | Maize | plastid | 85.11 | 72.4 |
| Bra039224.1-P | Field mustard | plastid | 61.17 | 62.84 |
| CDX76844 | Canola | plastid | 61.17 | 62.84 |
| CDY34804 | Canola | plastid | 61.17 | 62.84 |
| AT4G30620.1 | Thale cress | plastid | 60.11 | 62.78 |
| Bra010280.1-P | Field mustard | plastid | 60.11 | 61.75 |
| CDY23248 | Canola | plastid | 59.57 | 61.54 |
| GSMUA_Achr4P20470_001 | Banana | plastid | 62.77 | 61.46 |
| CDY55614 | Canola | plastid | 56.38 | 61.27 |
| PGSC0003DMT400020463 | Potato | mitochondrion | 59.57 | 60.87 |
| Solyc12g009980.1.1 | Tomato | plastid | 59.57 | 60.87 |
| VIT_11s0037g00330.t01 | Wine grape | plastid | 62.77 | 60.2 |
| AT2G24020.1 | Thale cress | plastid | 57.98 | 59.89 |
| KRH55034 | Soybean | plastid | 61.17 | 58.97 |
| KRH26162 | Soybean | plastid | 61.17 | 58.67 |
| PGSC0003DMT400067633 | Potato | plastid | 57.98 | 56.77 |
| Solyc08g006780.2.1 | Tomato | plastid | 56.38 | 55.21 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 65.96 | 54.39 |
| Zm00001d015505_P001 | Maize | plastid | 80.85 | 51.35 |
| CDY45942 | Canola | nucleus | 32.45 | 23.37 |
| Bra008272.1-P | Field mustard | nucleus | 32.45 | 23.37 |
| CDY20394 | Canola | nucleus | 32.45 | 23.19 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G137000.1 | EnsemblPlantsGene:TraesCS6D01G137000 | Gene3D:3.30.1310.10 | InterPro:IPR036894 | InterPro:YbaB-like_sf | InterPro:YbaB/EbfC |
| ncoils:Coil | PANTHER:PTHR33449 | PANTHER:PTHR33449:SF3 | PFAM:PF02575 | SUPFAM:SSF82607 | MapMan:23.1.7.2 |
Description
No Description!
Coordinates
chr6D:-:105574436..105580293
Molecular Weight (calculated)
20388.4 Da
IEP (calculated)
8.031
GRAVY (calculated)
-0.371
Length
188 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSTALSPV AFKSSFSPLP SRPARTRINV QGAFCLPCST WKRANNRSFR VYSLFGGKKE KDENGDEAPS KGGIFGNIGN MQNLYETVKK AQMVVQVEAV
101: RVQKELAATE IEGYCEGELI KVTLSGNQQP INVEITEAAM ELGAEKVSEL VNEAYKDAHQ RSVQAMKERM ADLAQSIGMP AGLGDGLK
101: RVQKELAATE IEGYCEGELI KVTLSGNQQP INVEITEAAM ELGAEKVSEL VNEAYKDAHQ RSVQAMKERM ADLAQSIGMP AGLGDGLK
001: MASTATNTDF FKTLLSPFSN GNAAQRSSRQ NIVWLNRKQS GNNNRSLRVN GLFGGGKKDN KEDGQSKAGI LGNMQNLYET VKKAQMVVQV EAVRVQKELA
101: VAEFDGYCQG ELVKVTLSGN QQPIRTDITD AAMELGSEKL SLLVTEAYKD AHSKSVLAMK ERMSDLAQSL GMPPGLDGLK
101: VAEFDGYCQG ELVKVTLSGN QQPIRTDITD AAMELGSEKL SLLVTEAYKD AHSKSVLAMK ERMSDLAQSL GMPPGLDGLK
Arabidopsis Description
Nucleoid-associated protein At4g30620, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M098]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.