Factsheet for Bra010280.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 6
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY23248	Canola	plastid	97.27	97.8
AT4G30620.1	Thale cress	plastid	86.89	88.33
Bra039224.1-P	Field mustard	plastid	78.14	78.14
Solyc12g009980.1.1	Tomato	plastid	66.12	65.76
PGSC0003DMT400020463	Potato	mitochondrion	65.57	65.22
VIT_11s0037g00330.t01	Wine grape	plastid	66.67	62.24
EES04638	Sorghum	plastid	62.84	62.16
KRH55034	Soybean	plastid	65.57	61.54
Os02t0180200-01	Rice	plasma membrane, plastid	61.75	61.08
KRH26162	Soybean	plastid	65.03	60.71
GSMUA_Achr4P20470_001	Banana	plastid	63.39	60.42
TraesCS6A01G147700.1	Wheat	plastid	61.75	60.11
TraesCS6D01G137000.1	Wheat	plastid	61.75	60.11
TraesCS6B01G175800.1	Wheat	plastid	61.2	59.57
GSMUA_AchrUn_...	Banana	mitochondrion	69.4	55.7
Zm00001d053743_P002	Maize	plastid	63.93	52.94
Zm00001d015505_P001	Maize	plastid	61.75	38.18
Bra008272.1-P	Field mustard	nucleus	42.08	29.5

Protein Annotations

MapMan:23.1.7.2	Gene3D:3.30.1310.10	EnsemblPlantsGene:Bra010280	EnsemblPlants:Bra010280.1	EnsemblPlants:Bra010280.1-P	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570
GO:GO:0009941	InterPro:IPR036894	UniProt:M4D1D1	PFAM:PF02575	PANTHER:PTHR33449	PANTHER:PTHR33449:SF3
SUPFAM:SSF82607	UniParc:UPI0002546F02	InterPro:YbaB-like_sf	InterPro:YbaB/EbfC	SEG:seg	:

Description

AT4G30620 (E=4e-075) | unknown protein

Coordinates

chrA08:+:13605706..13607096

Molecular Weight (calculated)

19897.8 Da

IEP (calculated)

9.721

GRAVY (calculated)

-0.502

Length

183 amino acids

Sequence
(BLAST)

001: MASTATTTDF FKPFLSPFSN GNKAAQQRGS RQKNNVVWLN RKSPNRSLRV NGLFGGGKKD NNDDNGQSKA GILGNMQNLY ETVKKAQMVV QVEAVRVQKE
101: LAVAEFDGYC EGELVKVTLS GNQQPIRTDI TDAAMELGSE KLSLLVTEAY KDAHAKSVLA MKERMSDLAQ SLGMPPGLSD GLK

Best Arabidopsis Sequence Match ( AT4G30620.1 )
(BLAST)

001: MASTATNTDF FKTLLSPFSN GNAAQRSSRQ NIVWLNRKQS GNNNRSLRVN GLFGGGKKDN KEDGQSKAGI LGNMQNLYET VKKAQMVVQV EAVRVQKELA
101: VAEFDGYCQG ELVKVTLSGN QQPIRTDITD AAMELGSEKL SLLVTEAYKD AHSKSVLAMK ERMSDLAQSL GMPPGLDGLK

Arabidopsis Description

Nucleoid-associated protein At4g30620, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M098]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.