CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
EER90611
EES01775
EES06089
KXG19617
KXG22120
OQU81032

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24020.1	EER90611	AT1G73790.1	21798944
AT2G24020.1	EES01775	AT3G47080.1	21798944
AT2G24020.1	KXG22120	AT3G47080.1	21798944
AT2G24020.1	EES06089	AT3G54960.1	21798944
AT2G24020.1	KXG19617	AT5G64260.1	21798944
AT2G24020.1	OQU81032	AT5G64260.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0180200-01	Rice	plasma membrane, plastid	89.19	89.19
TraesCS6B01G175800.1	Wheat	plastid	87.57	86.17
TraesCS6D01G137000.1	Wheat	plastid	86.49	85.11
TraesCS6A01G147700.1	Wheat	plastid	85.95	84.57
Zm00001d053743_P002	Maize	plastid	97.3	81.45
AT4G30620.1	Thale cress	plastid	62.16	63.89
CDY34804	Canola	plastid	62.7	63.39
Bra039224.1-P	Field mustard	plastid	62.7	63.39
CDX76844	Canola	plastid	62.7	63.39
AT2G24020.1	Thale cress	plastid	62.16	63.19
Bra010280.1-P	Field mustard	plastid	62.16	62.84
CDY23248	Canola	plastid	61.62	62.64
GSMUA_Achr4P20470_001	Banana	plastid	64.86	62.5
PGSC0003DMT400020463	Potato	mitochondrion	62.16	62.5
Solyc12g009980.1.1	Tomato	plastid	62.16	62.5
KRH55034	Soybean	plastid	65.41	62.05
CDY55614	Canola	plastid	57.84	61.85
KRH26162	Soybean	plastid	64.32	60.71
VIT_11s0037g00330.t01	Wine grape	plastid	64.32	60.71
PGSC0003DMT400067633	Potato	plastid	61.62	59.38
Solyc08g006780.2.1	Tomato	plastid	60.54	58.33
Zm00001d015505_P001	Maize	plastid	90.81	56.76
GSMUA_AchrUn_...	Banana	mitochondrion	69.19	56.14
CDY45942	Canola	nucleus	34.59	24.52
Bra008272.1-P	Field mustard	nucleus	34.59	24.52
CDY20394	Canola	nucleus	34.59	24.33

Protein Annotations

EnsemblPlants:EES04638	EnsemblPlantsGene:SORBI_3004G065300	EntrezGene:8077624	Gene3D:3.30.1310.10	InterPro:IPR036894	InterPro:YbaB-like_sf
InterPro:YbaB/EbfC	ncoils:Coil	PANTHER:PTHR33449	PANTHER:PTHR33449:SF3	PFAM:PF02575	ProteinID:EES04638
ProteinID:EES04638.1	RefSeq:XP_002451662.1	SEG:seg	SUPFAM:SSF82607	TIGRFAMs:TIGR00103	unigene:Sbi.15775
UniParc:UPI0001A85660	UniProt:C5XWV2	MapMan:23.1.7.2	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:5266794..5271407

Molecular Weight (calculated)

20102.1 Da

IEP (calculated)

8.027

GRAVY (calculated)

-0.372

Length

185 amino acids

Sequence
(BLAST)

001: MAPSAALAPA AFRSAFSTPL ASNPTRNRIN IEGAFCLPCS TRKRASYRPF RVYSLFGGKK DKDENGDEPS KAGIFGNMQN LYETVKKAQM VVQVEAVRVQ
101: KELAATEIDG YCEGELIKVT LSGNQQPIRV EITEAAMELG AEKLSELVND AYKDAHQRSV QAMKERMADL AQSLGMPAGL GDGLK

Best Arabidopsis Sequence Match ( AT2G24020.2 )
(BLAST)

001: MASMAATTNF TKSMLFPFSH GNASLNSQRR TWPKQYKSKN GYRSLRVNGL FGGGNKDNNS EDGQSKAGIF GNMQNMYETV KKAQMVVQVE AVRVQKELAA
101: AEFDGYCAGE LVKVTLSGNQ QPIRTDITEA AMELGSEKLS QLVTEAYKDA HAKSVVAMKE RMSDLAQSLG MPPGLSEGMK

Arabidopsis Description

STIC2Nucleoid-associated protein At2g24020, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O82230]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.