Factsheet for Bra039224.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 5
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003829.1-P
Bra007120.1-P
Bra015965.1-P
Bra018168.1-P
Bra019495.1-P
Bra024280.1-P
Bra031927.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24020.1	Bra003829.1-P	AT1G73790.1	21798944
AT2G24020.1	Bra015965.1-P	AT1G73790.1	21798944
AT2G24020.1	Bra018168.1-P	AT3G47080.1	21798944
AT2G24020.1	Bra019495.1-P	AT3G47080.1	21798944
AT2G24020.1	Bra007120.1-P	AT3G54960.1	21798944
AT2G24020.1	Bra024280.1-P	AT5G64260.1	21798944
AT2G24020.1	Bra031927.1-P	AT5G64260.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76844	Canola	plastid	99.45	99.45
CDY34804	Canola	plastid	98.91	98.91
AT2G24020.1	Thale cress	plastid	81.42	81.87
Bra010280.1-P	Field mustard	plastid	78.14	78.14
Solyc12g009980.1.1	Tomato	plastid	65.57	65.22
PGSC0003DMT400020463	Potato	mitochondrion	65.57	65.22
Os02t0180200-01	Rice	plasma membrane, plastid	64.48	63.78
EES04638	Sorghum	plastid	63.39	62.7
VIT_11s0037g00330.t01	Wine grape	plastid	66.12	61.73
KRH26162	Soybean	plastid	66.12	61.73
TraesCS6A01G147700.1	Wheat	plastid	63.39	61.7
TraesCS6D01G137000.1	Wheat	plastid	62.84	61.17
TraesCS6B01G175800.1	Wheat	plastid	62.3	60.64
KRH55034	Soybean	plastid	64.48	60.51
GSMUA_Achr4P20470_001	Banana	plastid	63.39	60.42
GSMUA_AchrUn_...	Banana	mitochondrion	67.76	54.39
Zm00001d053743_P002	Maize	plastid	64.48	53.39
Zm00001d015505_P001	Maize	plastid	61.75	38.18
Bra008272.1-P	Field mustard	nucleus	41.53	29.12

Protein Annotations

MapMan:23.1.7.2	Gene3D:3.30.1310.10	EnsemblPlantsGene:Bra039224	EnsemblPlants:Bra039224.1	EnsemblPlants:Bra039224.1-P	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0008150	GO:GO:0009507
GO:GO:0009535	GO:GO:0009536	GO:GO:0009570	GO:GO:0009579	GO:GO:0009941	GO:GO:0016020
GO:GO:0045037	InterPro:IPR036894	UniProt:M4FDQ3	PFAM:PF02575	PANTHER:PTHR33449	PANTHER:PTHR33449:SF3
SUPFAM:SSF82607	UniParc:UPI0002542DF6	InterPro:YbaB-like_sf	InterPro:YbaB/EbfC	:	:

Description

AT2G24020 (E=6e-076) | unknown protein

Coordinates

chrA09:+:31392357..31393511

Molecular Weight (calculated)

19925.6 Da

IEP (calculated)

8.470

GRAVY (calculated)

-0.639

Length

183 amino acids

Sequence
(BLAST)

001: MASTTDFTKS LLSPFSQHGF NSQRGSSRHN KNATWPNQHK PNRSLRVNGL FGGGNNKDNN NTEDGQSKAG GIFGNMQNMY ETVKKAQMVV QVEAVRVQKE
101: LAAAEFDGYC EGELVKVTLS GNQQPIRTDI TEAAMELGSE KLSLLVTEAY KDAHAKSVVA MKERMSDLAQ SLGMPPGLSE GMK

Best Arabidopsis Sequence Match ( AT2G24020.1 )
(BLAST)

001: MASMAATTNF TKSMLFPFSH VSGNASLNSQ RRTWPKQYKS KNGYRSLRVN GLFGGGNKDN NSEDGQSKAG IFGNMQNMYE TVKKAQMVVQ VEAVRVQKEL
101: AAAEFDGYCA GELVKVTLSG NQQPIRTDIT EAAMELGSEK LSQLVTEAYK DAHAKSVVAM KERMSDLAQS LGMPPGLSEG MK

Arabidopsis Description

STIC2Nucleoid-associated protein At2g24020, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O82230]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.