Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- nucleus 1
- cytosol 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES04638 | Sorghum | plastid | 62.5 | 64.86 |
| AT4G30620.1 | Thale cress | plastid | 60.42 | 64.44 |
| Os02t0180200-01 | Rice | plasma membrane, plastid | 61.98 | 64.32 |
| VIT_11s0037g00330.t01 | Wine grape | plastid | 65.62 | 64.29 |
| KRH26162 | Soybean | plastid | 65.1 | 63.78 |
| CDY23248 | Canola | plastid | 60.42 | 63.74 |
| Solyc12g009980.1.1 | Tomato | plastid | 60.94 | 63.59 |
| PGSC0003DMT400020463 | Potato | mitochondrion | 60.94 | 63.59 |
| CDY55614 | Canola | plastid | 57.29 | 63.58 |
| CDX76844 | Canola | plastid | 60.42 | 63.39 |
| CDY34804 | Canola | plastid | 60.42 | 63.39 |
| Bra039224.1-P | Field mustard | plastid | 60.42 | 63.39 |
| Bra010280.1-P | Field mustard | plastid | 60.42 | 63.39 |
| AT2G24020.1 | Thale cress | plastid | 59.9 | 63.19 |
| KRH55034 | Soybean | plastid | 64.06 | 63.08 |
| TraesCS6D01G137000.1 | Wheat | plastid | 61.46 | 62.77 |
| TraesCS6A01G147700.1 | Wheat | plastid | 61.46 | 62.77 |
| TraesCS6B01G175800.1 | Wheat | plastid | 60.94 | 62.23 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 72.92 | 61.4 |
| PGSC0003DMT400067633 | Potato | plastid | 59.38 | 59.38 |
| Solyc08g006780.2.1 | Tomato | plastid | 57.81 | 57.81 |
| Zm00001d053743_P002 | Maize | plastid | 62.5 | 54.3 |
| Zm00001d015505_P001 | Maize | plastid | 61.98 | 40.2 |
| CDY45942 | Canola | nucleus | 36.98 | 27.2 |
| Bra008272.1-P | Field mustard | nucleus | 36.98 | 27.2 |
| CDY20394 | Canola | nucleus | 36.98 | 27.0 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr4P20470_001 | EnsemblPlants:GSMUA_Achr4T20470_001 | EnsemblPlantsGene:GSMUA_Achr4G20470_001 | Gene3D:3.30.1310.10 | InterPro:IPR036894 | InterPro:YbaB-like_sf |
| InterPro:YbaB/EbfC | ncoils:Coil | PANTHER:PTHR33449 | PANTHER:PTHR33449:SF3 | PFAM:PF02575 | SUPFAM:SSF82607 |
| UniParc:UPI000294BF50 | UniProt:M0SQL0 | MapMan:23.1.7.2 | : | : | : |
Description
Putative UPF0133 protein Synpcc7942_0464 [Source:GMGC_GENE;Acc:GSMUA_Achr4G20470_001]
Coordinates
chr4:-:21094084..21101168
Molecular Weight (calculated)
21262.5 Da
IEP (calculated)
8.800
GRAVY (calculated)
-0.499
Length
192 amino acids
Sequence
(BLAST)
(BLAST)
001: MPSTSAVSGH FSDVLRPASW RPSAFPSSLL RHKFNTNCVP CLYWPSSTRE HKMKSLRVYG LFGGKKDKGE NTNDASSKAG ILGNMQNLYE TVKKAQMVVQ
101: VEAVRVKKEL EAAEFDGYCE GELIKVTLSG NQQPIRTEIT EAAMELGPEK LSLLINEAYK DAHEKSVQAM KERMNNLAQS LGMPPDLSGL KQ
101: VEAVRVKKEL EAAEFDGYCE GELIKVTLSG NQQPIRTEIT EAAMELGPEK LSLLINEAYK DAHEKSVQAM KERMNNLAQS LGMPPDLSGL KQ
001: MASTATNTDF FKTLLSPFSN GNAAQRSSRQ NIVWLNRKQS GNNNRSLRVN GLFGGGKKDN KEDGQSKAGI LGNMQNLYET VKKAQMVVQV EAVRVQKELA
101: VAEFDGYCQG ELVKVTLSGN QQPIRTDITD AAMELGSEKL SLLVTEAYKD AHSKSVLAMK ERMSDLAQSL GMPPGLDGLK
101: VAEFDGYCQG ELVKVTLSGN QQPIRTDITD AAMELGSEKL SLLVTEAYKD AHSKSVLAMK ERMSDLAQSL GMPPGLDGLK
Arabidopsis Description
Nucleoid-associated protein At4g30620, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M098]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.