CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 6
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY23248	Canola	plastid	91.33	86.81
AT4G30620.1	Thale cress	plastid	83.81	80.56
CDX76844	Canola	plastid	76.88	72.68
CDY34804	Canola	plastid	76.88	72.68
PGSC0003DMT400020463	Potato	mitochondrion	67.05	63.04
Solyc12g009980.1.1	Tomato	plastid	66.47	62.5
VIT_11s0037g00330.t01	Wine grape	plastid	67.05	59.18
KRH55034	Soybean	plastid	65.32	57.95
EES04638	Sorghum	plastid	61.85	57.84
Os02t0180200-01	Rice	plasma membrane, plastid	61.27	57.3
GSMUA_Achr4P20470_001	Banana	plastid	63.58	57.29
KRH26162	Soybean	plastid	64.74	57.14
TraesCS6A01G147700.1	Wheat	plastid	61.27	56.38
TraesCS6B01G175800.1	Wheat	plastid	61.27	56.38
TraesCS6D01G137000.1	Wheat	plastid	61.27	56.38
GSMUA_AchrUn_...	Banana	mitochondrion	67.63	51.32
Zm00001d053743_P002	Maize	plastid	63.01	49.32
Zm00001d015505_P001	Maize	plastid	60.69	35.47
CDY45942	Canola	nucleus	43.93	29.12
CDY20394	Canola	nucleus	43.35	28.52

Protein Annotations

EnsemblPlants:CDY55614	EnsemblPlantsGene:GSBRNA2T00017129001	Gene3D:3.30.1310.10	InterPro:IPR036894	InterPro:YbaB-like_sf	InterPro:YbaB/EbfC
PANTHER:PTHR33449	PANTHER:PTHR33449:SF3	PFAM:PF02575	ProteinID:CDY55614	ProteinID:CDY55614.1	SUPFAM:SSF82607
UniParc:UPI0004EDF139	UniProt:A0A078IVN9	MapMan:23.1.7.2	:	:	:

Description

BnaC03g77490DBnaC03g77490D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IVN9]

Coordinates

chrLK033416:-:16603..18009

Molecular Weight (calculated)

18908.7 Da

IEP (calculated)

9.460

GRAVY (calculated)

-0.361

Length

173 amino acids

Sequence
(BLAST)

001: MASTATTTDF FKPFLSPFPN GNKAGTRQNN MVWLNRNRSL RVNGLFGGGK KENSVDGQSK VPTFSKFNLY ETVKKAQMVV QVEAVRVQKE LAVAEFDGYC
101: EGELVKVTLS GNQQPIRTDI TDAAMELGSE KLSLLVTEAY KDAHAKSVLA MKERMSDLAQ SLGMPPGLSD GLK

Best Arabidopsis Sequence Match ( AT4G30620.1 )
(BLAST)

001: MASTATNTDF FKTLLSPFSN GNAAQRSSRQ NIVWLNRKQS GNNNRSLRVN GLFGGGKKDN KEDGQSKAGI LGNMQNLYET VKKAQMVVQV EAVRVQKELA
101: VAEFDGYCQG ELVKVTLSGN QQPIRTDITD AAMELGSEKL SLLVTEAYKD AHSKSVLAMK ERMSDLAQSL GMPPGLDGLK

Arabidopsis Description

Nucleoid-associated protein At4g30620, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M098]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.