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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • cytosol 1
  • plastid 1
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra008272.1-P Field mustard nucleus 100.0 100.0
CDY20394 Canola nucleus 92.34 91.64
CDY55614 Canola plastid 29.12 43.93
CDY23248 Canola plastid 29.5 42.31
CDX76844 Canola plastid 29.5 42.08
CDY34804 Canola plastid 29.5 42.08
KRH55034 Soybean plastid 27.97 37.44
KRH26162 Soybean plastid 27.97 37.24
GSMUA_Achr4P20470_001 Banana plastid 27.2 36.98
PGSC0003DMT400020463 Potato mitochondrion 26.05 36.96
Solyc12g009980.1.1 Tomato plastid 26.05 36.96
VIT_11s0037g00330.t01 Wine grape plastid 26.82 35.71
Os02t0180200-01 Rice plasma membrane, plastid 25.29 35.68
EES04638 Sorghum plastid 24.52 34.59
TraesCS6A01G147700.1 Wheat plastid 23.37 32.45
TraesCS6B01G175800.1 Wheat plastid 23.37 32.45
TraesCS6D01G137000.1 Wheat plastid 23.37 32.45
GSMUA_AchrUn_... Banana mitochondrion 26.82 30.7
Zm00001d053743_P002 Maize plastid 24.9 29.41
Zm00001d015505_P001 Maize plastid 24.52 21.62
Protein Annotations
EnsemblPlants:CDY45942EnsemblPlantsGene:GSBRNA2T00082939001Gene3D:3.30.1310.10InterPro:IPR036894InterPro:YbaB-like_sfInterPro:YbaB/EbfC
PANTHER:PTHR33449PANTHER:PTHR33449:SF3PFAM:PF02575ProteinID:CDY45942ProteinID:CDY45942.1SUPFAM:SSF82607
UniParc:UPI0002545F2DUniProt:A0A078I757MapMan:23.1.7.2:::
Description
BnaA02g17680DBnaA02g17680D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I757]
Coordinates
chrLK032643:+:14714..15987
Molecular Weight (calculated)
28934.9 Da
IEP (calculated)
10.502
GRAVY (calculated)
-0.668
Length
261 amino acids
Sequence
(BLAST)
001: MEFHRMKRKE LQAMCIKHGV PANLKKTEMV CRLTSLLEDG QSKNMLETTV KKTQVESVQK ELAVEEFDGY CEGELVKVTL SGNQEPIRTD ITEAAMELGS
101: EKLSLLVTEA YKDAYAKSLV IKEEGENVVG SRKVKKVKFS PESENQVFEF TRSLKKLPRR KNARTCSSQG GGSIELRRSK RTASKGGTVA AGCNGNSASG
201: IVKPEKVSSS LVKDHKVPRG KDDSKVEVVL RRSKRFANDI IKNTNGTLLN SSKRVTRRRG A
Best Arabidopsis Sequence Match ( AT4G30620.1 )
(BLAST)
001: MASTATNTDF FKTLLSPFSN GNAAQRSSRQ NIVWLNRKQS GNNNRSLRVN GLFGGGKKDN KEDGQSKAGI LGNMQNLYET VKKAQMVVQV EAVRVQKELA
101: VAEFDGYCQG ELVKVTLSGN QQPIRTDITD AAMELGSEKL SLLVTEAYKD AHSKSVLAMK ERMSDLAQSL GMPPGLDGLK
Arabidopsis Description
Nucleoid-associated protein At4g30620, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M098]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.