Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 2
- mitochondrion 5
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P20470_001 | Banana | plastid | 61.4 | 72.92 |
| Bra010280.1-P | Field mustard | plastid | 55.7 | 69.4 |
| CDY23248 | Canola | plastid | 55.26 | 69.23 |
| EES04638 | Sorghum | plastid | 56.14 | 69.19 |
| AT4G30620.1 | Thale cress | plastid | 54.39 | 68.89 |
| Bra039224.1-P | Field mustard | plastid | 54.39 | 67.76 |
| CDX76844 | Canola | plastid | 54.39 | 67.76 |
| CDY34804 | Canola | plastid | 54.39 | 67.76 |
| CDY55614 | Canola | plastid | 51.32 | 67.63 |
| Os02t0180200-01 | Rice | plasma membrane, plastid | 53.95 | 66.49 |
| Solyc08g006780.2.1 | Tomato | plastid | 55.7 | 66.15 |
| TraesCS6B01G175800.1 | Wheat | plastid | 54.39 | 65.96 |
| TraesCS6D01G137000.1 | Wheat | plastid | 54.39 | 65.96 |
| TraesCS6A01G147700.1 | Wheat | plastid | 54.39 | 65.96 |
| AT2G24020.1 | Thale cress | plastid | 52.63 | 65.93 |
| VIT_11s0037g00330.t01 | Wine grape | plastid | 56.14 | 65.31 |
| KRH55034 | Soybean | plastid | 55.7 | 65.13 |
| PGSC0003DMT400067633 | Potato | plastid | 54.82 | 65.1 |
| KRH26162 | Soybean | plastid | 55.26 | 64.29 |
| Solyc12g009980.1.1 | Tomato | plastid | 51.32 | 63.59 |
| PGSC0003DMT400020463 | Potato | mitochondrion | 51.32 | 63.59 |
| Zm00001d053743_P002 | Maize | plastid | 57.46 | 59.28 |
| Zm00001d015505_P001 | Maize | plastid | 56.58 | 43.58 |
| CDY45942 | Canola | nucleus | 30.7 | 26.82 |
| Bra008272.1-P | Field mustard | nucleus | 30.7 | 26.82 |
| CDY20394 | Canola | nucleus | 30.26 | 26.24 |
Protein Annotations
| EnsemblPlants:GSMUA_AchrUn_randomP13130_001 | EnsemblPlants:GSMUA_AchrUn_randomT13130_001 | EnsemblPlantsGene:GSMUA_AchrUn_randomG13130_001 | Gene3D:3.30.1310.10 | InterPro:IPR036894 | InterPro:YbaB-like_sf |
| InterPro:YbaB/EbfC | PANTHER:PTHR33449 | PANTHER:PTHR33449:SF3 | PFAM:PF02575 | SUPFAM:SSF82607 | UniParc:UPI000296C3E2 |
| UniProt:M0U8S2 | MapMan:23.1.7.2 | : | : | : | : |
Description
Putative UPF0133 protein Synpcc7942_0464 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG13130_001]
Coordinates
chrchrUn_random:+:63248974..63260629
Molecular Weight (calculated)
24851.1 Da
IEP (calculated)
9.306
GRAVY (calculated)
-0.282
Length
228 amino acids
Sequence
(BLAST)
(BLAST)
001: MFLLLSKSTA TLIHLKRARS LPFSLAFSKL WGCCCSRMAS TSAVGGHMSN VLRSAAWKPS ACPSQSHRLN ANCAPCLSWP SSRGEHKMRS LRVYGLFGGK
101: KDKSENADDA PSKAGILGNM QNLYETVKKA QMVVQVEAVR VQKELEAAEF DGYCEGELIK ATLSGNQQPI RIEITEAAME LGSEKLSLLV TEAYKDAHQK
201: SVQAMKERMS NLAQSLGMPP GLSEGLKQ
101: KDKSENADDA PSKAGILGNM QNLYETVKKA QMVVQVEAVR VQKELEAAEF DGYCEGELIK ATLSGNQQPI RIEITEAAME LGSEKLSLLV TEAYKDAHQK
201: SVQAMKERMS NLAQSLGMPP GLSEGLKQ
001: MASMAATTNF TKSMLFPFSH VSGNASLNSQ RRTWPKQYKS KNGYRSLRVN GLFGGGNKDN NSEDGQSKAG IFGNMQNMYE TVKKAQMVVQ VEAVRVQKEL
101: AAAEFDGYCA GELVKVTLSG NQQPIRTDIT EAAMELGSEK LSQLVTEAYK DAHAKSVVAM KERMSDLAQS LGMPPGLSEG MK
101: AAAEFDGYCA GELVKVTLSG NQQPIRTDIT EAAMELGSEK LSQLVTEAYK DAHAKSVVAM KERMSDLAQS LGMPPGLSEG MK
Arabidopsis Description
STIC2Nucleoid-associated protein At2g24020, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O82230]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.