Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY45942 | Canola | nucleus | 100.0 | 100.0 |
| Bra010280.1-P | Field mustard | plastid | 29.5 | 42.08 |
| Bra039224.1-P | Field mustard | plastid | 29.12 | 41.53 |
| KRH55034 | Soybean | plastid | 27.97 | 37.44 |
| KRH26162 | Soybean | plastid | 27.97 | 37.24 |
| GSMUA_Achr4P20470_001 | Banana | plastid | 27.2 | 36.98 |
| Solyc12g009980.1.1 | Tomato | plastid | 26.05 | 36.96 |
| PGSC0003DMT400020463 | Potato | mitochondrion | 26.05 | 36.96 |
| VIT_11s0037g00330.t01 | Wine grape | plastid | 26.82 | 35.71 |
| Os02t0180200-01 | Rice | plasma membrane, plastid | 25.29 | 35.68 |
| EES04638 | Sorghum | plastid | 24.52 | 34.59 |
| TraesCS6A01G147700.1 | Wheat | plastid | 23.37 | 32.45 |
| TraesCS6B01G175800.1 | Wheat | plastid | 23.37 | 32.45 |
| TraesCS6D01G137000.1 | Wheat | plastid | 23.37 | 32.45 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 26.82 | 30.7 |
| Zm00001d053743_P002 | Maize | plastid | 24.9 | 29.41 |
| Zm00001d015505_P001 | Maize | plastid | 24.52 | 21.62 |
Protein Annotations
| EnsemblPlants:Bra008272.1 | EnsemblPlants:Bra008272.1-P | EnsemblPlantsGene:Bra008272 | Gene3D:3.30.1310.10 | InterPro:IPR036894 | InterPro:YbaB-like_sf |
| InterPro:YbaB/EbfC | PANTHER:PTHR33449 | PANTHER:PTHR33449:SF3 | PFAM:PF02575 | SUPFAM:SSF82607 | UniParc:UPI0002545F2D |
| UniProt:M4CVM5 | MapMan:23.1.7.2 | : | : | : | : |
Description
AT4G30620 (E=2e-027) | unknown protein
Coordinates
chrA02:+:14261186..14262459
Molecular Weight (calculated)
28934.9 Da
IEP (calculated)
10.502
GRAVY (calculated)
-0.668
Length
261 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFHRMKRKE LQAMCIKHGV PANLKKTEMV CRLTSLLEDG QSKNMLETTV KKTQVESVQK ELAVEEFDGY CEGELVKVTL SGNQEPIRTD ITEAAMELGS
101: EKLSLLVTEA YKDAYAKSLV IKEEGENVVG SRKVKKVKFS PESENQVFEF TRSLKKLPRR KNARTCSSQG GGSIELRRSK RTASKGGTVA AGCNGNSASG
201: IVKPEKVSSS LVKDHKVPRG KDDSKVEVVL RRSKRFANDI IKNTNGTLLN SSKRVTRRRG A
101: EKLSLLVTEA YKDAYAKSLV IKEEGENVVG SRKVKKVKFS PESENQVFEF TRSLKKLPRR KNARTCSSQG GGSIELRRSK RTASKGGTVA AGCNGNSASG
201: IVKPEKVSSS LVKDHKVPRG KDDSKVEVVL RRSKRFANDI IKNTNGTLLN SSKRVTRRRG A
001: MASTATNTDF FKTLLSPFSN GNAAQRSSRQ NIVWLNRKQS GNNNRSLRVN GLFGGGKKDN KEDGQSKAGI LGNMQNLYET VKKAQMVVQV EAVRVQKELA
101: VAEFDGYCQG ELVKVTLSGN QQPIRTDITD AAMELGSEKL SLLVTEAYKD AHSKSVLAMK ERMSDLAQSL GMPPGLDGLK
101: VAEFDGYCQG ELVKVTLSGN QQPIRTDITD AAMELGSEKL SLLVTEAYKD AHSKSVLAMK ERMSDLAQSL GMPPGLDGLK
Arabidopsis Description
Nucleoid-associated protein At4g30620, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M098]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.