Factsheet for Os02t0180200-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid

Predictor Summary:

plastid 8
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0855200-01
Os02t0100100-01
Os03t0435800-00
Os03t0435900-01
Os03t0824000-01
Os05t0447700-01
Os06t0219900-01
Os11t0362633-00
Os11t0368172-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24020.1	Os03t0435800-00	AT1G73790.1	21798944
AT2G24020.1	Os03t0435900-01	AT1G73790.1	21798944
AT2G24020.1	Os03t0824000-01	AT1G73790.1	21798944
AT2G24020.1	Os11t0362633-00	AT1G73790.1	21798944
AT2G24020.1	Os11t0368172-01	AT1G73790.1	21798944
AT2G24020.1	Os01t0855200-01	AT3G47080.1	21798944
AT2G24020.1	Os05t0447700-01	AT3G47080.1	21798944
AT2G24020.1	Os02t0100100-01	AT3G54960.1	21798944
AT2G24020.1	Os06t0219900-01	AT5G64260.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES04638	Sorghum	plastid	89.19	89.19
TraesCS6D01G137000.1	Wheat	plastid	87.57	86.17
TraesCS6B01G175800.1	Wheat	plastid	87.57	86.17
TraesCS6A01G147700.1	Wheat	plastid	87.57	86.17
Zm00001d053743_P002	Maize	plastid	89.73	75.11
Bra039224.1-P	Field mustard	plastid	63.78	64.48
CDX76844	Canola	plastid	63.78	64.48
CDY34804	Canola	plastid	63.78	64.48
AT4G30620.1	Thale cress	plastid	61.62	63.33
AT2G24020.1	Thale cress	plastid	61.08	62.09
PGSC0003DMT400067633	Potato	plastid	64.32	61.98
GSMUA_Achr4P20470_001	Banana	plastid	64.32	61.98
PGSC0003DMT400020463	Potato	mitochondrion	61.62	61.96
Solyc12g009980.1.1	Tomato	plastid	61.62	61.96
Bra010280.1-P	Field mustard	plastid	61.08	61.75
KRH26162	Soybean	plastid	65.41	61.73
CDY23248	Canola	plastid	60.54	61.54
CDY55614	Canola	plastid	57.3	61.27
VIT_11s0037g00330.t01	Wine grape	plastid	64.86	61.22
KRH55034	Soybean	plastid	63.78	60.51
Solyc08g006780.2.1	Tomato	plastid	61.62	59.38
GSMUA_AchrUn_...	Banana	mitochondrion	66.49	53.95
Zm00001d015505_P001	Maize	plastid	84.32	52.7
CDY45942	Canola	nucleus	35.68	25.29
Bra008272.1-P	Field mustard	nucleus	35.68	25.29
CDY20394	Canola	nucleus	35.68	25.1

Protein Annotations

MapMan:23.1.7.2	Gene3D:3.30.1310.10	EntrezGene:4328507	ProteinID:BAD28019.1	ProteinID:BAF08004.1	ProteinID:BAS77300.1
ncoils:Coil	ProteinID:EAZ21970.1	InterPro:IPR036894	EnsemblPlantsGene:Os02g0180200	EnsemblPlants:Os02t0180200-01	PFAM:PF02575
PANTHER:PTHR33449	PANTHER:PTHR33449:SF3	UniProt:Q6ETK1	SUPFAM:SSF82607	TIGRFAMs:TIGR00103	UniParc:UPI00003CE5B2
RefSeq:XP_015623350.1	InterPro:YbaB-like_sf	InterPro:YbaB/EbfC	:	:	:

Description

Uncharacterised protein family UPF0133 domain containing protein. (Os02t0180200-01)

Coordinates

chr2:+:4460342..4463571

Molecular Weight (calculated)

20155.2 Da

IEP (calculated)

8.025

GRAVY (calculated)

-0.359

Length

185 amino acids

Sequence
(BLAST)

001: MAPSTALSPV AFKSSFSPLL FNPTRSKINV EGAFCLPCYN RKKASNRSFR VYSLFGGKKD KDENGEEAPS KAGIFGNMQN LYETVKKAQM VVQVEAVRVQ
101: KELAATEIDG YCEGELIKVT LSGNQQPVRV EITEAAMEVG AEKLSELVND AYKDAHQRSV QAMKERMADL AQSLGMPAGL GDGLK

Best Arabidopsis Sequence Match ( AT2G24020.1 )
(BLAST)

001: MASMAATTNF TKSMLFPFSH VSGNASLNSQ RRTWPKQYKS KNGYRSLRVN GLFGGGNKDN NSEDGQSKAG IFGNMQNMYE TVKKAQMVVQ VEAVRVQKEL
101: AAAEFDGYCA GELVKVTLSG NQQPIRTDIT EAAMELGSEK LSQLVTEAYK DAHAKSVVAM KERMSDLAQS LGMPPGLSEG MK

Arabidopsis Description

STIC2Nucleoid-associated protein At2g24020, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O82230]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.