Factsheet for PGSC0003DMT400020463

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
plastid 7
cytosol 2

Predictors

GFP

MS/MS

Papers

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400008689
PGSC0003DMT400020867
PGSC0003DMT400068084
PGSC0003DMT400078227
PGSC0003DMT400079160

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24020.1	PGSC0003DMT400068084	AT1G73790.1	21798944
AT2G24020.1	PGSC0003DMT400078227	AT3G47080.1	21798944
AT2G24020.1	PGSC0003DMT400008689	AT3G54960.1	21798944
AT2G24020.1	PGSC0003DMT400020867	AT3G54960.1	21798944
AT2G24020.1	PGSC0003DMT400079160	AT5G64260.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g009980.1.1	Tomato	plastid	98.37	98.37
CDY55614	Canola	plastid	63.04	67.05
KRH26162	Soybean	plastid	71.2	66.84
CDY23248	Canola	plastid	65.76	66.48
Bra010280.1-P	Field mustard	plastid	65.22	65.57
Bra039224.1-P	Field mustard	plastid	65.22	65.57
CDX76844	Canola	plastid	65.22	65.57
CDY34804	Canola	plastid	65.22	65.57
AT4G30620.1	Thale cress	plastid	63.59	65.0
VIT_11s0037g00330.t01	Wine grape	plastid	69.02	64.8
KRH55034	Soybean	plastid	68.48	64.62
AT2G24020.1	Thale cress	plastid	63.59	64.29
EES04638	Sorghum	plastid	62.5	62.16
Os02t0180200-01	Rice	plasma membrane, plastid	61.96	61.62
GSMUA_Achr4P20470_001	Banana	plastid	63.59	60.94
TraesCS6B01G175800.1	Wheat	plastid	61.41	60.11
TraesCS6A01G147700.1	Wheat	plastid	60.87	59.57
TraesCS6D01G137000.1	Wheat	plastid	60.87	59.57
PGSC0003DMT400067633	Potato	plastid	58.7	56.25
Zm00001d053743_P002	Maize	plastid	63.04	52.49
GSMUA_AchrUn_...	Banana	mitochondrion	63.59	51.32
Zm00001d015505_P001	Maize	plastid	61.41	38.18
CDY45942	Canola	nucleus	36.96	26.05
Bra008272.1-P	Field mustard	nucleus	36.96	26.05
CDY20394	Canola	nucleus	36.96	25.86

Protein Annotations

EnsemblPlants:PGSC0003DMT400020463	EnsemblPlantsGene:PGSC0003DMG400007906	EntrezGene:102597318	Gene3D:3.30.1310.10	InterPro:IPR036894	InterPro:YbaB-like_sf
InterPro:YbaB/EbfC	PANTHER:PTHR33449	PANTHER:PTHR33449:SF3	PFAM:PF02575	PGSC:PGSC0003DMG400007906	RefSeq:XP_006350107.1
SUPFAM:SSF82607	UniParc:UPI0002950D8D	UniProt:M1ADI8	MapMan:23.1.7.2	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400007906]

Coordinates

chr12:-:2367995..2374396

Molecular Weight (calculated)

19964.0 Da

IEP (calculated)

7.935

GRAVY (calculated)

-0.381

Length

184 amino acids

Sequence
(BLAST)

001: MASTSAFTAG ISNLHSFNKP CPNGNQVGMW TLSRSGCRKV LDNPRPLQIC SLFGGKKDNN EQNNDAPSKA GLFGNMQNLY ETVKKAQNVV QVEAVRVQKE
101: LALAEFDGYC EGELIKVTLS GNQQPIRTEI TEAAMALGPE KLSLLITEAY KDAHQKSVLA MKERMSDLAQ SLGMPAGLGE GFKQ

Best Arabidopsis Sequence Match ( AT4G30620.1 )
(BLAST)

001: MASTATNTDF FKTLLSPFSN GNAAQRSSRQ NIVWLNRKQS GNNNRSLRVN GLFGGGKKDN KEDGQSKAGI LGNMQNLYET VKKAQMVVQV EAVRVQKELA
101: VAEFDGYCQG ELVKVTLSGN QQPIRTDITD AAMELGSEKL SLLVTEAYKD AHSKSVLAMK ERMSDLAQSL GMPPGLDGLK

Arabidopsis Description

Nucleoid-associated protein At4g30620, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M098]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.