Factsheet for PGSC0003DMT400067633

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g006780.2.1	Tomato	plastid	84.9	84.9
Os02t0180200-01	Rice	plasma membrane, plastid	61.98	64.32
EES04638	Sorghum	plastid	59.38	61.62
GSMUA_Achr4P20470_001	Banana	plastid	59.38	59.38
PGSC0003DMT400020463	Potato	mitochondrion	56.25	58.7
TraesCS6A01G147700.1	Wheat	plastid	57.29	58.51
TraesCS6B01G175800.1	Wheat	plastid	57.29	58.51
TraesCS6D01G137000.1	Wheat	plastid	56.77	57.98
GSMUA_AchrUn_...	Banana	mitochondrion	65.1	54.82
Zm00001d053743_P002	Maize	plastid	59.9	52.04
Zm00001d015505_P001	Maize	plastid	58.33	37.84

Protein Annotations

EnsemblPlants:PGSC0003DMT400067633	EnsemblPlantsGene:PGSC0003DMG400026299	EntrezGene:102593509	Gene3D:3.30.1310.10	InterPro:IPR036894	InterPro:YbaB-like_sf
InterPro:YbaB/EbfC	PANTHER:PTHR33449	PANTHER:PTHR33449:SF3	PFAM:PF02575	PGSC:PGSC0003DMG400026299	RefSeq:XP_006357087.1
SEG:seg	SUPFAM:SSF82607	UniParc:UPI0002962852	UniProt:M1CHK9	MapMan:23.1.7.2	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400026299]

Coordinates

chr8:-:1783035..1788291

Molecular Weight (calculated)

20664.6 Da

IEP (calculated)

8.847

GRAVY (calculated)

-0.431

Length

192 amino acids

Sequence
(BLAST)

001: MAISPSATLT SQFLNCHRPN DHKCPSSSSL SFSKSNSSTL LIGPSSVSSR NGQKARRSFH VHGLFGGKKD NNGDDNSSKA GVLGNMQNLY ETVKKAQMVV
101: QVEAVRVQKE LAAAEFDGYC EGELIKATLS GNQQPVRIEI TDAAMDMGSD KLSLLVTEAY RDAHQKSVVA MKERMNNLAQ SLGMPAGLEG MK

Best Arabidopsis Sequence Match ( AT4G30620.1 )
(BLAST)

001: MASTATNTDF FKTLLSPFSN GNAAQRSSRQ NIVWLNRKQS GNNNRSLRVN GLFGGGKKDN KEDGQSKAGI LGNMQNLYET VKKAQMVVQV EAVRVQKELA
101: VAEFDGYCQG ELVKVTLSGN QQPIRTDITD AAMELGSEKL SLLVTEAYKD AHSKSVLAMK ERMSDLAQSL GMPPGLDGLK

Arabidopsis Description

Nucleoid-associated protein At4g30620, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M098]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.