Factsheet for Solyc08g006780.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20363867
plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400067633	Potato	plastid	84.9	84.9
Os02t0180200-01	Rice	plasma membrane, plastid	59.38	61.62
Solyc12g009980.1.1	Tomato	plastid	58.85	61.41
EES04638	Sorghum	plastid	58.33	60.54
GSMUA_Achr4P20470_001	Banana	plastid	57.81	57.81
TraesCS6B01G175800.1	Wheat	plastid	56.25	57.45
TraesCS6A01G147700.1	Wheat	plastid	55.73	56.91
TraesCS6D01G137000.1	Wheat	plastid	55.21	56.38
GSMUA_AchrUn_...	Banana	mitochondrion	66.15	55.7
Zm00001d053743_P002	Maize	plastid	59.38	51.58
Zm00001d015505_P001	Maize	plastid	57.81	37.5

Protein Annotations

EnsemblPlants:Solyc08g006780.2.1	EnsemblPlantsGene:Solyc08g006780.2	Gene3D:3.30.1310.10	InterPro:IPR036894	InterPro:YbaB-like_sf	InterPro:YbaB/EbfC
PANTHER:PTHR33449	PANTHER:PTHR33449:SF3	PFAM:PF02575	SEG:seg	SUPFAM:SSF82607	UniParc:UPI000276C237
UniProt:K4CIG6	MapMan:23.1.7.2	:	:	:	:

Description

No Description!

Coordinates

chr8:+:1340597..1346293

Molecular Weight (calculated)

20722.7 Da

IEP (calculated)

9.097

GRAVY (calculated)

-0.428

Length

192 amino acids

Sequence
(BLAST)

001: MAISPSATLT SQFLNYQRPN DHKCPSSSSL PFSKSNSSTL LIGPSSVSLR NGQKSRRSLH VHGLFGGKKD NNSDDNSSKA GVLGNMQNLY ETVKKAQMVV
101: QVEAVRVQKE LAAAEFDGYC EGELIKATLS GNQQPVRIEI TDAAMDMGSD KLSLLVTEAY KDAHQKSVLA MKERMSNLAQ SLGMPAGLEG MK

Best Arabidopsis Sequence Match ( AT4G30620.1 )
(BLAST)

001: MASTATNTDF FKTLLSPFSN GNAAQRSSRQ NIVWLNRKQS GNNNRSLRVN GLFGGGKKDN KEDGQSKAGI LGNMQNLYET VKKAQMVVQV EAVRVQKELA
101: VAEFDGYCQG ELVKVTLSGN QQPIRTDITD AAMELGSEKL SLLVTEAYKD AHSKSVLAMK ERMSDLAQSL GMPPGLDGLK

Arabidopsis Description

Nucleoid-associated protein At4g30620, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M098]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.