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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • extracellular 7
  • endoplasmic reticulum 5
  • vacuole 5
  • plasma membrane 7
  • golgi 5
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, secretory
BaCelLo:secretory
EpiLoc:cytosol
iPSORT:secretory
MultiLoc:extracellular
Plant-mPloc:plasma membrane
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:extracellular
YLoc:plasma membrane
 nucleus: 21132161
nucleus: 27291164
nucleus: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27291164 doi
X Yin, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI

Inferred distinct locusB in Crop

locusBlocations
KRH06239
KRH47662

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G64260.1 KRH06239 AT1G54060.1 21798944
AT5G64260.1 KRH47662 AT1G54060.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH18203 Soybean nucleus 93.75 94.06
KRH10561 Soybean extracellular 71.71 73.4
Bra024280.1-P Field mustard endoplasmic reticulum, extracellular 72.37 72.37
CDY43802 Canola endoplasmic reticulum, extracellular 72.37 72.37
AT5G64260.1 Thale cress extracellular 71.38 71.15
CDX84508 Canola endoplasmic reticulum, extracellular 70.72 70.72
CDY63721 Canola endoplasmic reticulum, extracellular 70.07 70.07
VIT_03s0017g01210.t01 Wine grape extracellular, vacuole 70.72 70.03
KRH43888 Soybean extracellular 67.43 69.49
Bra031927.1-P Field mustard endoplasmic reticulum, extracellular 69.41 69.41
CDY31329 Canola endoplasmic reticulum, extracellular 69.41 69.41
CDX69904 Canola endoplasmic reticulum, extracellular 66.78 68.35
CDY21583 Canola extracellular 66.45 68.01
Bra009384.1-P Field mustard endoplasmic reticulum, extracellular 66.45 68.01
AT5G09440.1 Thale cress extracellular 61.84 67.63
CDY40722 Canola extracellular 56.58 62.32
Solyc04g074470.1.1 Tomato nucleus 62.83 61.81
KRH72379 Soybean extracellular, vacuole 63.82 61.39
PGSC0003DMT400079160 Potato extracellular, golgi 62.17 61.16
KRH16767 Soybean extracellular, vacuole 63.49 61.08
CDY44798 Canola extracellular 53.62 60.15
Bra028635.1-P Field mustard extracellular 58.22 60.0
KRH62322 Soybean nucleus 60.86 58.73
KRH53041 Soybean nucleus 61.84 58.02
KRH53039 Soybean extracellular 60.86 57.99
KRH16766 Soybean nucleus 59.54 57.64
GSMUA_Achr3P20420_001 Banana endoplasmic reticulum, vacuole 42.11 57.4
KRH72378 Soybean nucleus 58.88 57.19
CDY44799 Canola extracellular 52.63 57.14
KRH16765 Soybean nucleus 58.55 56.87
GSMUA_AchrUn_... Banana endoplasmic reticulum, plasma membrane 56.58 56.77
KRH53040 Soybean nucleus 57.24 56.49
GSMUA_Achr10P... Banana endoplasmic reticulum, vacuole 57.57 56.45
GSMUA_Achr6P02120_001 Banana endoplasmic reticulum, plasma membrane 42.43 56.09
CDY40721 Canola extracellular 27.96 55.92
Bra028634.1-P Field mustard extracellular 54.61 54.97
GSMUA_Achr8P14380_001 Banana extracellular 45.07 54.8
Os06t0219900-01 Rice extracellular, plasma membrane, vacuole 52.96 51.27
OQU81032 Sorghum extracellular 53.29 51.27
TraesCS7D01G180100.1 Wheat endoplasmic reticulum, plasma membrane 52.63 50.31
TraesCS7B01G083900.1 Wheat endoplasmic reticulum, vacuole 52.63 50.31
Zm00001d052799_P001 Maize endoplasmic reticulum, extracellular 50.66 50.16
TraesCS7A01G178200.1 Wheat endoplasmic reticulum, vacuole 52.63 50.16
Zm00001d037204_P001 Maize golgi, mitochondrion 53.62 49.85
KRH62324 Soybean nucleus 61.84 49.74
KXG19617 Sorghum golgi, mitochondrion, vacuole 53.62 49.7
HORVU7Hr1G036710.2 Barley endoplasmic reticulum, extracellular, plasma membrane 51.97 49.69
KRH62323 Soybean plastid 56.91 48.6
KRH65072 Soybean cytosol 16.78 41.8
KRH51406 Soybean plasma membrane, vacuole 32.89 33.22
KRH60707 Soybean plasma membrane, vacuole 31.58 32.54
KRG92438 Soybean nucleus 35.86 31.87
KRH40006 Soybean nucleus 35.86 31.32
KRH23788 Soybean nucleus 35.86 31.32
KRH34361 Soybean nucleus 35.86 28.39
Protein Annotations
EMBL:ACUP02004791EnsemblPlants:KRH42138EnsemblPlantsGene:GLYMA_08G071300EntrezGene:100776258InterPro:EXORDIUM-likePANTHER:PTHR31279
PANTHER:PTHR31279:SF12PFAM:PF04674ProteinID:KRH42138ProteinID:KRH42138.1SEG:segSignalP:SignalP-noTM
TMHMM:TMhelixUniParc:UPI0002338557UniProt:I1KR17MapMan:35.1::
Description
hypothetical protein
Coordinates
chr8:-:5452150..5454331
Molecular Weight (calculated)
32541.2 Da
IEP (calculated)
8.938
GRAVY (calculated)
0.071
Length
304 amino acids
Sequence
(BLAST)
001: MTLNYNIALA FSAVLTLLLF PLLTVGELVE EQPLVLKYHN GQLLKGRITV NLIWYGTFTP IQRSIIVDFI NSLSSAPNAP LPSTATWWKT TEKYKVGGGS
101: PALVVGMQFL HPAYTLGKNL KGRDLLALAS KFNEINSITV VLTAKDVAVE GFCMSRCGTH GSTRNVKSNA RTAYIWVGNS ETQCPGQCAW PFHQPIYGPQ
201: TPPLVSPNGD AGVDGMVINL ATLLAGTVTN PFNNGYFQGP PTAPLEAVSA CTGVFGSGSY PGYPGRVLVD KATGASYNAH GANGRRYLVP AMWDPQTSTC
301: KTLV
Best Arabidopsis Sequence Match ( AT5G64260.1 )
(BLAST)
001: MASNYRFAIF LTLFFATAGF SAAALVEEQP LVMKYHNGVL LKGNITVNLV WYGKFTPIQR SVIVDFIHSL NSKDVASSAA VPSVASWWKT TEKYKGGSST
101: LVVGKQLLLE NYPLGKSLKN PYLRALSTKL NGGLRSITVV LTAKDVTVER FCMSRCGTHG SSGSNPRRAA NGAAYVWVGN SETQCPGYCA WPFHQPIYGP
201: QTPPLVAPNG DVGVDGMIIN LATLLANTVT NPFNNGYYQG PPTAPLEAVS ACPGIFGSGS YPGYAGRVLV DKTTGSSYNA RGLAGRKYLL PAMWDPQSST
301: CKTLV
Arabidopsis Description
EXL2Protein EXORDIUM-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FE06]
SUBAcon: [extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.