CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 4
endoplasmic reticulum 5
vacuole 6
plasma membrane 4
golgi 4
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	vacuole

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG92438	Soybean	nucleus	87.76	98.54
KRH65072	Soybean	cytosol	27.6	86.89
Solyc10g074540.1.1	Tomato	nucleus	70.31	78.49
VIT_03s0038g03860.t01	Wine grape	extracellular	68.23	76.16
PGSC0003DMT400043340	Potato	extracellular	69.53	75.85
Bra002034.1-P	Field mustard	endoplasmic reticulum, vacuole	64.58	69.27
CDY24324	Canola	endoplasmic reticulum, vacuole	64.58	69.27
CDX71355	Canola	endoplasmic reticulum, vacuole	64.32	68.61
AT2G17230.1	Thale cress	endoplasmic reticulum, vacuole	64.58	68.32
KRH40006	Soybean	nucleus	52.08	57.47
KRH23788	Soybean	nucleus	51.3	56.61
KRH18203	Soybean	nucleus	29.43	37.29
KRH43888	Soybean	extracellular	28.65	37.29
KRH53040	Soybean	nucleus	29.17	36.36
KRH10561	Soybean	extracellular	28.12	36.36
KRH16767	Soybean	extracellular, vacuole	29.69	36.08
KRH72379	Soybean	extracellular, vacuole	29.69	36.08
KRH42138	Soybean	nucleus	28.39	35.86
KRH72378	Soybean	nucleus	29.17	35.78
KRH53041	Soybean	nucleus	29.95	35.49
KRH16765	Soybean	nucleus	28.91	35.46
KRH16766	Soybean	nucleus	28.39	34.71
KRH62322	Soybean	nucleus	27.34	33.33
KRH53039	Soybean	extracellular	26.3	31.66
KRH62323	Soybean	plastid	28.91	31.18
KRH62324	Soybean	nucleus	29.17	29.63
KRH60707	Soybean	plasma membrane, vacuole	22.4	29.15
KRH51406	Soybean	plasma membrane, vacuole	22.66	28.9

Protein Annotations

EMBL:ACUP02006591	EnsemblPlants:KRH34361	EnsemblPlantsGene:GLYMA_10G179200	EntrezGene:100782566	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:EXORDIUM-like	PANTHER:PTHR31279	PANTHER:PTHR31279:SF36	PFAM:PF04674	ProteinID:KRH34361
ProteinID:KRH34361.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI00023CD8DA	UniProt:A0A0R0I2D9	MapMan:35.1

Description

hypothetical protein

Coordinates

chr10:+:41242175..41250202

Molecular Weight (calculated)

41876.9 Da

IEP (calculated)

6.574

GRAVY (calculated)

-0.044

Length

384 amino acids

Sequence
(BLAST)

001: MAAVSSPCSL KHFIYPSFLP YSLTVPSLAE IVTTMLSLFT NLLLFLSLLI GLCNCRVTTT NEEVQTLNTN THFNPQVPPL RTLSSSKRFE GSSEFVKLKY
101: HMGPVLSSPI NIYLIWYGKW PQSQKLLIKD FLNSISDDHH RASPSPSVSD WWRTVSLYTD QTGANISRSV SIAGEYSDLR YSHGTHLTRL SVQDVIATAV
201: QAKPFPVDHR NGIYLILTAE DVTMEDFCRA VCGFHYFTFP SKVGYTLPYA WVGNSGKQCP EVCAYPFAVP GYMGGGGPGH LTPPNGDVGV DGMVSVIGHE
301: LAELSSNPLV NAWYAGEDPT APTEIGDLCE GLYGTGGGGG YIGSVMKDGE GRTFNLNGRN GRKFLVQWIW SPVLKACAGP NALD

Best Arabidopsis Sequence Match ( AT2G17230.1 )
(BLAST)

001: MSSPATTITF FFFFTLSSFF YITSSLQNNN NNKHTATVNS LNIPSAAAEI TLVNPKLPPR SLSLTSSKKF EGSSNLVHLR YHMGPVLSSS PINIYVIWYG
101: QWSRPHKSLI RDFLNSISDA KAPSPSVSEW WRTASLYTDQ TGSNVSRSVL IAGEYSDSKY SHGQHLTRLT IQEVIASAAR SASFPVDHKN GMYLVLTSHD
201: VTMQDFCRAV CGFHYFTFPS MVGYTMPYAW VGQSGKQCPE VCAYPFALPG YMGHGGPGEL RPPNGETGVD GMVSVIGHEL AEVVSNPLIN AWYAGEDPTA
301: PTEIGDLCEG LYGSGGGGGY IGQVMRDREG KTFNMNGKGG RKFLVQWIWN PNLKACSGPN SVD

Arabidopsis Description

EXL5Protein EXORDIUM-like 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SII5]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.