CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 6
plasma membrane 6
golgi 5
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH34361	Soybean	nucleus	98.54	87.76
KRH65072	Soybean	cytosol	30.99	86.89
Solyc10g074540.1.1	Tomato	nucleus	79.24	78.78
VIT_03s0038g03860.t01	Wine grape	extracellular	77.49	77.03
PGSC0003DMT400043340	Potato	extracellular	78.66	76.42
Bra002034.1-P	Field mustard	endoplasmic reticulum, vacuole	73.39	70.11
CDY24324	Canola	endoplasmic reticulum, vacuole	73.39	70.11
CDX71355	Canola	endoplasmic reticulum, vacuole	73.1	69.44
AT2G17230.1	Thale cress	endoplasmic reticulum, vacuole	72.81	68.59
KRH40006	Soybean	nucleus	58.19	57.18
KRH23788	Soybean	nucleus	57.02	56.03
KRH43888	Soybean	extracellular	32.16	37.29
KRH18203	Soybean	nucleus	32.75	36.96
KRH10561	Soybean	extracellular	31.58	36.36
KRH42138	Soybean	nucleus	31.87	35.86
KRH72378	Soybean	nucleus	32.75	35.78
KRH16767	Soybean	extracellular, vacuole	33.04	35.76
KRH72379	Soybean	extracellular, vacuole	33.04	35.76
KRH16765	Soybean	nucleus	32.46	35.46
KRH53040	Soybean	nucleus	31.87	35.39
KRH53041	Soybean	nucleus	33.33	35.19
KRH16766	Soybean	nucleus	31.58	34.39
KRH62322	Soybean	nucleus	30.41	33.02
KRH53039	Soybean	extracellular	29.24	31.35
KRH62323	Soybean	plastid	31.29	30.06
KRH62324	Soybean	nucleus	31.87	28.84
KRH60707	Soybean	plasma membrane, vacuole	24.85	28.81
KRH51406	Soybean	plasma membrane, vacuole	25.15	28.57

Protein Annotations

EMBL:ACUP02012759	EnsemblPlants:KRG92438	EnsemblPlantsGene:GLYMA_20G211000	EntrezGene:100786500	InterPro:EXORDIUM-like	PANTHER:PTHR31279
PANTHER:PTHR31279:SF36	PFAM:PF04674	ProteinID:KRG92438	ProteinID:KRG92438.1	SEG:seg	SignalP:SignalP-noTM
UniParc:UPI000233DC89	UniProt:I1NIB1	MapMan:35.1	:	:	:

Description

hypothetical protein

Coordinates

chr20:-:44766261..44767719

Molecular Weight (calculated)

37321.5 Da

IEP (calculated)

6.979

GRAVY (calculated)

-0.083

Length

342 amino acids

Sequence
(BLAST)

001: MLSLFPNLFL FLSLLIGLCN CRVQTLNTNP THFNPQVPPL RTLSSSKRFE GSSEFVKLKY HMGPVLSSPI NIYLIWYGKW PQSQKLLIKD FLNSISDHRA
101: APSPSVSDWW RTVSLYTDQT GANISRSVSI AGEYSDLRYS HGTHLTRLSV QEVIATAVQA KPFPVDHRNG IYLILTAEDV TMEDFCRAVC GFHYFTFPSK
201: VGYTLPYAWV GNSGKQCPEV CAYPFAVPGY MGGGGPGHLT PPNGDVGVDG MVSVIGHELA ELSSNPLVNA WYAGEDPTAP TEIGDLCEGL YGTGGGGGYI
301: GSVMKDGEGR TFNLNGRNGR KFLVQWIWSP VLKACAGPNA LD

Best Arabidopsis Sequence Match ( AT2G17230.1 )
(BLAST)

001: MSSPATTITF FFFFTLSSFF YITSSLQNNN NNKHTATVNS LNIPSAAAEI TLVNPKLPPR SLSLTSSKKF EGSSNLVHLR YHMGPVLSSS PINIYVIWYG
101: QWSRPHKSLI RDFLNSISDA KAPSPSVSEW WRTASLYTDQ TGSNVSRSVL IAGEYSDSKY SHGQHLTRLT IQEVIASAAR SASFPVDHKN GMYLVLTSHD
201: VTMQDFCRAV CGFHYFTFPS MVGYTMPYAW VGQSGKQCPE VCAYPFALPG YMGHGGPGEL RPPNGETGVD GMVSVIGHEL AEVVSNPLIN AWYAGEDPTA
301: PTEIGDLCEG LYGSGGGGGY IGQVMRDREG KTFNMNGKGG RKFLVQWIWN PNLKACSGPN SVD

Arabidopsis Description

EXL5Protein EXORDIUM-like 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SII5]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.