Factsheet for Solyc04g074470.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g122030.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G64260.1	Solyc03g122030.1.1	AT1G54060.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400079160	Potato	extracellular, golgi	94.17	94.17
Solyc01g105410.2.1	Tomato	endoplasmic reticulum	63.75	65.45
Bra024280.1-P	Field mustard	endoplasmic reticulum, extracellular	64.08	65.13
CDY43802	Canola	endoplasmic reticulum, extracellular	64.08	65.13
CDX84508	Canola	endoplasmic reticulum, extracellular	63.75	64.8
Bra009384.1-P	Field mustard	endoplasmic reticulum, extracellular	62.14	64.65
CDX69904	Canola	endoplasmic reticulum, extracellular	62.14	64.65
KRH18203	Soybean	nucleus	63.11	64.36
CDY21583	Canola	extracellular	61.81	64.31
AT5G64260.1	Thale cress	extracellular	62.46	63.28
Bra031927.1-P	Field mustard	endoplasmic reticulum, extracellular	62.14	63.16
CDY31329	Canola	endoplasmic reticulum, extracellular	62.14	63.16
CDY63721	Canola	endoplasmic reticulum, extracellular	62.14	63.16
Solyc04g074420.1.1	Tomato	nucleus	18.12	62.92
KRH42138	Soybean	nucleus	61.81	62.83
KRH10561	Soybean	extracellular	60.19	62.63
KRH43888	Soybean	extracellular	59.55	62.37
AT5G09440.1	Thale cress	extracellular	55.99	62.23
CDY40722	Canola	extracellular	53.4	59.78
GSMUA_Achr3P20420_001	Banana	endoplasmic reticulum, vacuole	42.72	59.19
CDY44798	Canola	extracellular	51.46	58.67
GSMUA_Achr10P...	Banana	endoplasmic reticulum, vacuole	57.28	57.1
Bra028635.1-P	Field mustard	extracellular	54.37	56.95
GSMUA_Achr6P02120_001	Banana	endoplasmic reticulum, plasma membrane	42.07	56.52
GSMUA_Achr8P14380_001	Banana	extracellular	45.63	56.4
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, plasma membrane	54.69	55.78
Solyc04g074450.1.1	Tomato	extracellular	56.63	55.73
Solyc04g074440.1.1	Tomato	nucleus	56.31	55.24
Solyc04g074410.1.1	Tomato	nucleus	55.66	55.13
CDY40721	Canola	extracellular	26.86	54.61
CDY44799	Canola	extracellular	48.22	53.21
Bra028634.1-P	Field mustard	extracellular	51.13	52.32
Solyc04g074460.1.1	Tomato	cytosol, plastid	15.53	52.17
Os06t0219900-01	Rice	extracellular, plasma membrane, vacuole	52.1	51.27
OQU81032	Sorghum	extracellular	52.1	50.95
Zm00001d052799_P001	Maize	endoplasmic reticulum, extracellular	50.16	50.49
KXG19617	Sorghum	golgi, mitochondrion, vacuole	53.07	50.0
TraesCS7D01G180100.1	Wheat	endoplasmic reticulum, plasma membrane	50.81	49.37
Solyc04g074430.1.1	Tomato	nucleus	21.04	49.24
Zm00001d037204_P001	Maize	golgi, mitochondrion	52.1	49.24
TraesCS7A01G178200.1	Wheat	endoplasmic reticulum, vacuole	50.81	49.22
HORVU7Hr1G036710.2	Barley	endoplasmic reticulum, extracellular, plasma membrane	50.49	49.06
TraesCS7B01G083900.1	Wheat	endoplasmic reticulum, vacuole	50.16	48.74
Solyc04g074400.1.1	Tomato	nucleus	47.57	47.57
Solyc10g074540.1.1	Tomato	nucleus	35.92	32.27
Solyc03g083560.1.1	Tomato	nucleus	35.6	31.52
Solyc06g034390.1.1	Tomato	nucleus	33.01	29.48

Protein Annotations

EnsemblPlants:Solyc04g074470.1.1	EnsemblPlantsGene:Solyc04g074470.1	InterPro:EXORDIUM-like	PANTHER:PTHR31279	PANTHER:PTHR31279:SF8	PFAM:PF04674
SEG:seg	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0002765640	UniProt:K4BTY5	MapMan:35.1

Description

No Description!

Coordinates

chr4:+:60453784..60454713

Molecular Weight (calculated)

33122.5 Da

IEP (calculated)

10.077

GRAVY (calculated)

0.092

Length

309 amino acids

Sequence
(BLAST)

001: MESSKPIVTI FILLFSLFVL FPNPSLANSR ILALVKEKPL VLKYHKGALL KGNVTINLIW YGKFTSVQRS IIVDFIQSLS PKTKKIKSPP SVASWWSTTE
101: AYKGGASVIS LGKQIFDEKY SLGKYLKDPQ LESLASKATR VNSIAVILTA TDVGVDDFCM NRCGMHGSTR LKKAGKFAYA WVGNSASQCP GQCAWPFQKP
201: IVGPQITPLV APNGDVGVDG MIINLATVLA GTVTNPFDGG YFQGPGNAPL EAVSACTGIF GSGAFPGYPG MVLLDKKTGG SYNAPGMNGR KYLLPAMWDP
301: KTSKCKTLV

Best Arabidopsis Sequence Match ( AT5G64260.1 )
(BLAST)

001: MASNYRFAIF LTLFFATAGF SAAALVEEQP LVMKYHNGVL LKGNITVNLV WYGKFTPIQR SVIVDFIHSL NSKDVASSAA VPSVASWWKT TEKYKGGSST
101: LVVGKQLLLE NYPLGKSLKN PYLRALSTKL NGGLRSITVV LTAKDVTVER FCMSRCGTHG SSGSNPRRAA NGAAYVWVGN SETQCPGYCA WPFHQPIYGP
201: QTPPLVAPNG DVGVDGMIIN LATLLANTVT NPFNNGYYQG PPTAPLEAVS ACPGIFGSGS YPGYAGRVLV DKTTGSSYNA RGLAGRKYLL PAMWDPQSST
301: CKTLV

Arabidopsis Description

EXL2Protein EXORDIUM-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FE06]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.