Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 6
- vacuole 6
- plasma membrane 6
- golgi 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400079205 | Potato | endoplasmic reticulum, vacuole | 94.82 | 94.82 |
| Solyc04g074420.1.1 | Tomato | nucleus | 21.04 | 73.03 |
| VIT_18s0001g06140.t01 | Wine grape | endoplasmic reticulum, plasma membrane | 65.7 | 64.24 |
| GSMUA_Achr8P17620_001 | Banana | endoplasmic reticulum, extracellular | 45.95 | 54.62 |
| Solyc01g105410.2.1 | Tomato | endoplasmic reticulum | 52.75 | 54.15 |
| Solyc04g074410.1.1 | Tomato | nucleus | 54.37 | 53.85 |
| Solyc04g074450.1.1 | Tomato | extracellular | 54.69 | 53.82 |
| Solyc04g074460.1.1 | Tomato | cytosol, plastid | 15.86 | 53.26 |
| Solyc04g074440.1.1 | Tomato | nucleus | 54.05 | 53.02 |
| Solyc04g074470.1.1 | Tomato | nucleus | 47.57 | 47.57 |
| HORVU5Hr1G011440.2 | Barley | endoplasmic reticulum, plasma membrane | 45.31 | 44.44 |
| Zm00001d014318_P001 | Maize | extracellular, plasma membrane | 47.25 | 44.38 |
| TraesCS5B01G052300.1 | Wheat | vacuole | 44.98 | 43.17 |
| TraesCS5D01G058000.1 | Wheat | extracellular | 45.31 | 43.08 |
| Os10t0376400-00 | Rice | extracellular, plasma membrane | 45.95 | 42.52 |
| TraesCS5A01G047700.1 | Wheat | vacuole | 44.66 | 42.46 |
| TraesCS5A01G047400.1 | Wheat | vacuole | 44.34 | 42.15 |
| OQU91894 | Sorghum | cytosol, endoplasmic reticulum, plasma membrane | 46.28 | 38.13 |
| Solyc04g074430.1.1 | Tomato | nucleus | 15.86 | 37.12 |
| Solyc10g074540.1.1 | Tomato | nucleus | 33.98 | 30.52 |
| Solyc06g034390.1.1 | Tomato | nucleus | 31.07 | 27.75 |
| Solyc03g083560.1.1 | Tomato | nucleus | 30.74 | 27.22 |
Protein Annotations
| EnsemblPlants:Solyc04g074400.1.1 | EnsemblPlantsGene:Solyc04g074400.1 | InterPro:EXORDIUM-like | PANTHER:PTHR31279 | PANTHER:PTHR31279:SF6 | PFAM:PF04674 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI0002765639 | UniProt:K4BTX8 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr4:-:60406893..60407822
Molecular Weight (calculated)
33465.2 Da
IEP (calculated)
9.061
GRAVY (calculated)
-0.098
Length
309 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSFNYSKTP YPLVVLIFLS LLHITYATRN LFSLYQPPPM SLTYHNGDLL ESELKISIIW YGKFSPAQKS IIVDFLRSLN SPSKIWSRKT PTVTKWWQTI
101: QTYLTKAGKK ETRLVLSNQF TDENCSIGKT LKKSQISELA HSKKGELILV LTAQDVVMEG FCMGNCGYHG SGQGKRSVFI WVGNSATQCP GQCAWPFHQP
201: IYGPQAKPLG APNGDVGADG MVVNIASLLA GVVTNPYGNG YYQGPAEAPL EAASACAGLY GKGAYPGYAG ELLVDSITGA SYNAHGTNGR KYLLPGLFDP
301: NKSACSTIV
101: QTYLTKAGKK ETRLVLSNQF TDENCSIGKT LKKSQISELA HSKKGELILV LTAQDVVMEG FCMGNCGYHG SGQGKRSVFI WVGNSATQCP GQCAWPFHQP
201: IYGPQAKPLG APNGDVGADG MVVNIASLLA GVVTNPYGNG YYQGPAEAPL EAASACAGLY GKGAYPGYAG ELLVDSITGA SYNAHGTNGR KYLLPGLFDP
301: NKSACSTIV
001: MSLIIVFFFF SLLLTSNGQF FDESKNYEGS SDLVDLQYHL GPVISSPVTS LYIIWYGRWN PTHQSIIRDF LYSVSAPAPA QYPSVSNWWK TVRLYRDQTG
101: SNITDTLVLS GEFHDSTYSH GSHLTRFSVQ SVIRTALTSK LPLNAVNGLY LVLTSDDVEM QEFCRAICGF HYFTFPSVVG ATVPYAWVGN SERQCPEMCA
201: YPFAQPKPFP GSGFVAREKM KPPNGEVGID GMISVIAHEL AEVSSNPMLN GWYGGEDATA PTEIADLCLG VYGSGGGGGY MGSVYKDRWR NVYNVKGVKG
301: RKYLIQWVWD LNRNRCFGPN AMN
101: SNITDTLVLS GEFHDSTYSH GSHLTRFSVQ SVIRTALTSK LPLNAVNGLY LVLTSDDVEM QEFCRAICGF HYFTFPSVVG ATVPYAWVGN SERQCPEMCA
201: YPFAQPKPFP GSGFVAREKM KPPNGEVGID GMISVIAHEL AEVSSNPMLN GWYGGEDATA PTEIADLCLG VYGSGGGGGY MGSVYKDRWR NVYNVKGVKG
301: RKYLIQWVWD LNRNRCFGPN AMN
Arabidopsis Description
EXL7EXL7 [Source:UniProtKB/TrEMBL;Acc:A0A178VYH7]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.