Factsheet for VIT_18s0001g06140.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 5
plasma membrane 7
golgi 5
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g074400.1.1	Tomato	nucleus	64.24	65.7
PGSC0003DMT400079205	Potato	endoplasmic reticulum, vacuole	62.97	64.4
VIT_18s0001g06030.t01	Wine grape	extracellular, plasma membrane	54.11	56.81
GSMUA_Achr8P17620_001	Banana	endoplasmic reticulum, extracellular	45.57	55.38
VIT_18s0001g06150.t01	Wine grape	vacuole	55.7	55.17
VIT_18s0001g06170.t01	Wine grape	endoplasmic reticulum, vacuole	55.38	55.03
VIT_18s0001g06020.t01	Wine grape	endoplasmic reticulum, vacuole	55.06	54.72
VIT_03s0017g01210.t01	Wine grape	extracellular, vacuole	52.85	54.4
VIT_18s0001g06180.t01	Wine grape	plasma membrane, plastid, vacuole	54.75	47.79
Zm00001d014318_P001	Maize	extracellular, plasma membrane	48.42	46.5
HORVU5Hr1G011440.2	Barley	endoplasmic reticulum, plasma membrane	45.25	45.4
TraesCS5B01G052300.1	Wheat	vacuole	45.89	45.03
TraesCS5A01G047700.1	Wheat	vacuole	46.2	44.92
TraesCS5A01G047400.1	Wheat	vacuole	45.89	44.62
Os10t0376400-00	Rice	extracellular, plasma membrane	46.84	44.31
TraesCS5D01G058000.1	Wheat	extracellular	45.57	44.31
VIT_16s0039g01800.t01	Wine grape	cytosol	28.48	40.91
OQU91894	Sorghum	cytosol, endoplasmic reticulum, plasma membrane	47.78	40.27
VIT_07s0005g00870.t01	Wine grape	extracellular, plasma membrane	41.14	40.25
VIT_01s0011g01920.t01	Wine grape	vacuole	33.54	31.74
VIT_16s0022g01430.t01	Wine grape	extracellular, golgi	32.28	29.31
VIT_03s0038g03860.t01	Wine grape	extracellular	30.06	27.62

Protein Annotations

EntrezGene:100253906	wikigene:100253906	MapMan:35.1	UniProt:A5AG34	EMBL:AM425878	ProteinID:CAN68979
ProteinID:CAN68979.1	ProteinID:CCB45589	ProteinID:CCB45589.1	InterPro:EXORDIUM-like	EMBL:FN595227	EntrezGene:LOC100253906
wikigene:LOC100253906	PFAM:PF04674	PANTHER:PTHR31279	PANTHER:PTHR31279:SF6	TMHMM:TMhelix	UniParc:UPI000151E88C
ArrayExpress:VIT_18s0001g06140	EnsemblPlantsGene:VIT_18s0001g06140	EnsemblPlants:VIT_18s0001g06140.t01	unigene:Vvi.20804	RefSeq:XP_002285764	RefSeq:XP_002285764.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr18:-:4643431..4644462

Molecular Weight (calculated)

33922.6 Da

IEP (calculated)

7.705

GRAVY (calculated)

0.012

Length

316 amino acids

Sequence
(BLAST)

001: MAFSLSLKTH SLVVVVVIFH LFFISPCFCA RKLTSLYQPP PMALTYHNGA LLEGHLPVSI LWYGQFSPAQ KSIVADFLLS LDPHDQPENL SSKKPSTSQW
101: WKTIQTYLKK AGKREIQIEL SNQISDESCS MGKTLKKSQI SELARAVSSK SSGLTLVLTA KDVAVEGFCM SNCGFHGSDA RKRSAFIWVG NSETQCPGQC
201: AWPFHQPIYG PQTTPLIAPN GDVGLDGMVE NIATLLAGTV TNPFGNGYFQ GSAEAPLEVA SACPGIYGKG AYPGYAGELL VDSSTGASYN ALGVNSRKYL
301: LPAVLDPSTS QCSTVV

Best Arabidopsis Sequence Match ( AT5G51550.1 )
(BLAST)

001: MHSLPVNLVL TVLTVFLTSP AQVIGYRPYP PKTNGSDQIF DASKKFEGSS NLVRLRYHMG PVLTNNITVH PIWYGTWQKS QKKIIREFIN SISAVGSKHP
101: SVSGWWKTVQ LYTDQTGSNI TGTVRLGEEK NDRFYSHGKS LTRLSIQSVI KSAVTSRSRP LPVNPKSGLY LLLTADDVYV QDFCGQVCGF HYFTFPSIVG
201: FTLPYAWVGN SAKLCPGVCA YPFAVPAFIP GLKPVKSPNG DVGVDGMISV IAHEIAELAT NPLVNAWYAG PDPVAPVEIA DLCEGIYGTG GGGSYTGQML
301: NDHSGATYNV NGIRRRYLIQ WLWSHVVSYC TGPNALD

Arabidopsis Description

EXL3Protein EXORDIUM-like 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHM9]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.