Factsheet for VIT_16s0039g01800.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
plasma membrane 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH60707	Soybean	plasma membrane, vacuole	50.91	37.97
KRH51406	Soybean	plasma membrane, vacuole	49.55	36.21
VIT_03s0017g01210.t01	Wine grape	extracellular, vacuole	44.09	31.6
VIT_18s0001g06030.t01	Wine grape	extracellular, plasma membrane	43.18	31.56
AT3G02970.1	Thale cress	endoplasmic reticulum, extracellular, golgi	45.91	30.42
VIT_18s0001g06150.t01	Wine grape	vacuole	44.09	30.41
VIT_18s0001g06170.t01	Wine grape	endoplasmic reticulum, vacuole	43.64	30.19
Bra001070.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	44.55	29.97
CDX92021	Canola	endoplasmic reticulum, extracellular, vacuole	44.55	29.97
CDX74229	Canola	endoplasmic reticulum, extracellular, vacuole	44.55	29.88
VIT_18s0001g06020.t01	Wine grape	endoplasmic reticulum, vacuole	43.18	29.87
Bra032025.1-P	Field mustard	golgi, plasma membrane, vacuole	43.18	29.32
VIT_18s0001g06140.t01	Wine grape	endoplasmic reticulum, plasma membrane	40.91	28.48
VIT_18s0001g06180.t01	Wine grape	plasma membrane, plastid, vacuole	43.64	26.52
VIT_07s0005g00870.t01	Wine grape	extracellular, plasma membrane	37.27	25.39
CDY28728	Canola	mitochondrion	45.0	24.09
VIT_01s0011g01920.t01	Wine grape	vacuole	32.27	21.26
VIT_16s0022g01430.t01	Wine grape	extracellular, golgi	30.45	19.25
VIT_03s0038g03860.t01	Wine grape	extracellular	30.0	19.19
CDY43160	Canola	cytosol	44.09	17.77

Protein Annotations

ArrayExpress:VIT_16s0039g01800	EMBL:FN595750	EnsemblPlants:VIT_16s0039g01800.t01	EnsemblPlantsGene:VIT_16s0039g01800	EntrezGene:100242601	EntrezGene:LOC100242601
InterPro:EXORDIUM-like	PANTHER:PTHR31279	PANTHER:PTHR31279:SF13	PFAM:PF04674	ProteinID:CBI26498	ProteinID:CBI26498.3
RefSeq:XP_002273753	RefSeq:XP_002273753.1	TIGR:TC66144	unigene:Vvi.14233	unigene:Vvi.26420	UniParc:UPI0001BE2A76
UniProt:D7T7M7	wikigene:100242601	wikigene:LOC100242601	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr16:-:1727130..1728786

Molecular Weight (calculated)

23392.8 Da

IEP (calculated)

7.748

GRAVY (calculated)

-0.136

Length

220 amino acids

Sequence
(BLAST)

001: MVESYQSAAN DKLFTVPKIR VRVVRQVTDV SYSIGKVITK DFLSGLVSKA TNGDSNTVAV VFTSREVTVQ GLCMGKCSEH GVIGPSNQLY MIVGNPETEC
101: PGSCAWPFHR PDYGPQGVTL QPPNGNVGAD SMVISFASAL AGLVTNPYND GFYDGPESDP KEASTICHGI FGSGAFPGYT GKVRVNPSNG GCFNAHGIKG
201: KKFLLPALWD PKTSSCWTTM

Best Arabidopsis Sequence Match ( AT3G02970.1 )
(BLAST)

001: MAMASASSSS SSISVIIFLL LAPLCLSREP PSQIPNGTLD LSLLWYGQFT PTQKERVHDF IESLNFDAKE GLDPKVSAWW KVVESYQERF EVKDIYRQKK
101: SNRTVAPRIK VKVVRSYVDE KMKYGKELTM GNGEKLVETA IGNMSKVVPV VLLSAQVRAH GVGFCDGTCQ HNALAKIKGQ KEPRRYIMVS NPEVECPGEC
201: AWPFHTADKG PRGMTYQPAS GEVGADALVI QLATGLADLA TNPDLTKSLF KSETTPYNDD VKKNHESSSM YIVDPATKCT RVFGSGAFPG FTGRIRVDPI
301: TGGAFNSHGI NHLKFLIPSI WDPKTKSCWT PM

Arabidopsis Description

EXL6Protein EXORDIUM-like 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9M8T8]
SUBAcon: [endoplasmic reticulum,golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.