CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra032025.1-P	Field mustard	golgi, plasma membrane, vacuole	71.53	90.74
CDX92021	Canola	endoplasmic reticulum, extracellular, vacuole	63.75	80.12
CDX74229	Canola	endoplasmic reticulum, extracellular, vacuole	63.5	79.57
AT3G02970.1	Thale cress	endoplasmic reticulum, extracellular, golgi	60.83	75.3
CDY43160	Canola	cytosol	93.67	70.51
VIT_16s0039g01800.t01	Wine grape	cytosol	24.09	45.0
CDY40721	Canola	extracellular	13.14	35.53
KRH60707	Soybean	plasma membrane, vacuole	25.3	35.25
KRH51406	Soybean	plasma membrane, vacuole	25.06	34.22
CDY40722	Canola	extracellular	21.9	32.61
CDY63721	Canola	endoplasmic reticulum, extracellular	24.09	32.57
CDY31329	Canola	endoplasmic reticulum, extracellular	23.84	32.24
CDX90701	Canola	endoplasmic reticulum, vacuole	24.33	32.15
CDY21583	Canola	extracellular	23.11	31.99
CDX69904	Canola	endoplasmic reticulum, extracellular	23.11	31.99
CDY05033	Canola	endoplasmic reticulum, vacuole	24.33	31.85
CDY44799	Canola	extracellular	21.65	31.79
CDY44798	Canola	extracellular	20.68	31.37
CDY43802	Canola	endoplasmic reticulum, extracellular	22.63	30.59
CDX84508	Canola	endoplasmic reticulum, extracellular	22.63	30.59
CDY31668	Canola	endoplasmic reticulum, vacuole	18.98	24.3
CDX84257	Canola	extracellular, vacuole	18.49	23.68
CDY46938	Canola	vacuole	18.0	21.96
CDX91593	Canola	vacuole	18.0	21.96
CDX71355	Canola	endoplasmic reticulum, vacuole	18.73	21.39
CDY24324	Canola	endoplasmic reticulum, vacuole	18.49	21.23

Protein Annotations

EnsemblPlants:CDY28728	EnsemblPlantsGene:GSBRNA2T00041366001	Gene3D:3.40.630.30	InterPro:EXORDIUM-like	PANTHER:PTHR31279	PANTHER:PTHR31279:SF13
PFAM:PF04674	ProteinID:CDY28728	ProteinID:CDY28728.1	UniParc:UPI0004EF29E1	UniProt:A0A078GVP0	MapMan:35.1

Description

BnaCnng06140DBnaCnng06140D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GVP0]

Coordinates

chrLK032225:-:452531..454349

Molecular Weight (calculated)

46215.6 Da

IEP (calculated)

8.635

GRAVY (calculated)

-0.284

Length

411 amino acids

Sequence
(BLAST)

001: MRLVYLYAYN NPAIRLYNRL MFRCVRRLNG FYLIKRQHFD AFLFVYFVNG SRSPCSPLEV AMFVVNYMKN GIKSVASKLT RKEEQGMKWL VCKDTDCVLP
101: TQTKPNLGSS SSGEPPLQIP NGTLDLSLLW YGQFTPVQKE RVQDFIESLN FDSKEGLDPK VSAWWKVVES YQERYEVKEI YQQKSNRTVA PRIKVKIVRS
201: FVDEKMKYGT ELTIENGEKL VETATENMSK VVPVVLLSAQ VRSQGLGFCN KTCQRYALTL NGKEKPQPYV MVSDPEVQCP GECAWPFHIA NEGPHGMTYQ
301: PPSGEIGADA LVIQLATGLA DVATNPALSE SLFKSEPPYI TEGNHISSDY IVDPATKCTR VFGSGAFPGF TGRIRVDPVT GGAFNSHGIN HLKFLIPSVW
401: DPKTKSCWTP M

Best Arabidopsis Sequence Match ( AT3G02970.1 )
(BLAST)

001: MAMASASSSS SSISVIIFLL LAPLCLSREP PSQIPNGTLD LSLLWYGQFT PTQKERVHDF IESLNFDAKE GLDPKVSAWW KVVESYQERF EVKDIYRQKK
101: SNRTVAPRIK VKVVRSYVDE KMKYGKELTM GNGEKLVETA IGNMSKVVPV VLLSAQVRAH GVGFCDGTCQ HNALAKIKGQ KEPRRYIMVS NPEVECPGEC
201: AWPFHTADKG PRGMTYQPAS GEVGADALVI QLATGLADLA TNPDLTKSLF KSETTPYNDD VKKNHESSSM YIVDPATKCT RVFGSGAFPG FTGRIRVDPI
301: TGGAFNSHGI NHLKFLIPSI WDPKTKSCWT PM

Arabidopsis Description

EXL6Protein EXORDIUM-like 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9M8T8]
SUBAcon: [endoplasmic reticulum,golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.