Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 5
- vacuole 6
- plasma membrane 6
- golgi 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400072047 | Potato | extracellular, vacuole | 95.09 | 94.81 |
| PGSC0003DMT400072046 | Potato | extracellular, vacuole | 95.09 | 94.81 |
| Solyc03g083560.1.1 | Tomato | nucleus | 78.32 | 77.65 |
| Bra022553.1-P | Field mustard | vacuole | 71.39 | 73.29 |
| CDY46938 | Canola | vacuole | 71.39 | 73.29 |
| CDX91593 | Canola | vacuole | 71.39 | 73.29 |
| AT5G51550.1 | Thale cress | extracellular, vacuole | 71.39 | 73.29 |
| VIT_16s0022g01430.t01 | Wine grape | extracellular, golgi | 71.1 | 70.69 |
| KRH40006 | Soybean | nucleus | 70.23 | 69.83 |
| KRH23788 | Soybean | nucleus | 69.65 | 69.25 |
| HORVU4Hr1G033560.1 | Barley | cytosol, extracellular | 13.58 | 61.84 |
| EER87789 | Sorghum | golgi, vacuole | 58.96 | 59.82 |
| Os06t0133600-01 | Rice | golgi, vacuole | 59.25 | 58.91 |
| GSMUA_Achr1P16640_001 | Banana | vacuole | 56.36 | 58.73 |
| Zm00001d045458_P001 | Maize | endoplasmic reticulum, extracellular | 56.07 | 57.06 |
| HORVU3Hr1G007150.2 | Barley | extracellular | 25.72 | 57.05 |
| TraesCS7D01G067100.1 | Wheat | vacuole | 56.94 | 56.94 |
| TraesCS7A01G071600.1 | Wheat | vacuole | 56.65 | 56.81 |
| TraesCS4A01G417000.1 | Wheat | golgi | 56.65 | 56.65 |
| Solyc10g074540.1.1 | Tomato | nucleus | 55.49 | 55.81 |
| HORVU7Hr1G014410.3 | Barley | plastid | 57.51 | 44.72 |
| Solyc01g105410.2.1 | Tomato | endoplasmic reticulum | 30.92 | 35.55 |
| Solyc04g074410.1.1 | Tomato | nucleus | 30.92 | 34.29 |
| Solyc04g074460.1.1 | Tomato | cytosol, plastid | 8.96 | 33.7 |
| Solyc04g074450.1.1 | Tomato | extracellular | 30.35 | 33.44 |
| Solyc04g074430.1.1 | Tomato | nucleus | 12.72 | 33.33 |
| Solyc04g074440.1.1 | Tomato | nucleus | 30.35 | 33.33 |
| Solyc04g074470.1.1 | Tomato | nucleus | 29.48 | 33.01 |
| Solyc04g074420.1.1 | Tomato | nucleus | 8.38 | 32.58 |
| Solyc04g074400.1.1 | Tomato | nucleus | 27.75 | 31.07 |
Protein Annotations
| EnsemblPlants:Solyc06g034390.1.1 | EnsemblPlantsGene:Solyc06g034390.1 | InterPro:EXORDIUM-like | PANTHER:PTHR31279 | PANTHER:PTHR31279:SF7 | PFAM:PF04674 |
| SEG:seg | SignalP:SignalP-TM | TMHMM:TMhelix | UniParc:UPI0002765B5D | UniProt:K4C4R0 | MapMan:35.1 |
Description
No Description!
Coordinates
chr6:-:24216543..24217583
Molecular Weight (calculated)
38186.3 Da
IEP (calculated)
7.695
GRAVY (calculated)
-0.169
Length
346 amino acids
Sequence
(BLAST)
(BLAST)
001: MDQCHRTYFP ATFYLLAGIC LLLLTSPVNG WRPWPNQKPN TTDLLYSPSK KYEGSSDLIK LKYHMGPVLT ANITVYPIWY GRWSKSQKRI IREFINSISA
101: VDSKPPSVSG WWKTVQSYTD QTGANISGNV HIGAEKTDRS YSHGKSLTRL SIQSVIKSAV TASTTPPLPI NSKSGVYLLL TCDDVYVENF CQDVCGFHYF
201: TFPSIVGYTL PYAWVGNSGK LCPSVCAYPF SVPDYMGRGF KAVKSPNNDV GVDGMISVIA HEIAELSTNP LVNAWYAGDD PIFPVEIGDL CEGIYGSGGG
301: GSYTGQMLNG EDGATYNMNG IRRKFLVQWV WNHVVNYCTG PNALDQ
101: VDSKPPSVSG WWKTVQSYTD QTGANISGNV HIGAEKTDRS YSHGKSLTRL SIQSVIKSAV TASTTPPLPI NSKSGVYLLL TCDDVYVENF CQDVCGFHYF
201: TFPSIVGYTL PYAWVGNSGK LCPSVCAYPF SVPDYMGRGF KAVKSPNNDV GVDGMISVIA HEIAELSTNP LVNAWYAGDD PIFPVEIGDL CEGIYGSGGG
301: GSYTGQMLNG EDGATYNMNG IRRKFLVQWV WNHVVNYCTG PNALDQ
001: MHSLPVNLVL TVLTVFLTSP AQVIGYRPYP PKTNGSDQIF DASKKFEGSS NLVRLRYHMG PVLTNNITVH PIWYGTWQKS QKKIIREFIN SISAVGSKHP
101: SVSGWWKTVQ LYTDQTGSNI TGTVRLGEEK NDRFYSHGKS LTRLSIQSVI KSAVTSRSRP LPVNPKSGLY LLLTADDVYV QDFCGQVCGF HYFTFPSIVG
201: FTLPYAWVGN SAKLCPGVCA YPFAVPAFIP GLKPVKSPNG DVGVDGMISV IAHEIAELAT NPLVNAWYAG PDPVAPVEIA DLCEGIYGTG GGGSYTGQML
301: NDHSGATYNV NGIRRRYLIQ WLWSHVVSYC TGPNALD
101: SVSGWWKTVQ LYTDQTGSNI TGTVRLGEEK NDRFYSHGKS LTRLSIQSVI KSAVTSRSRP LPVNPKSGLY LLLTADDVYV QDFCGQVCGF HYFTFPSIVG
201: FTLPYAWVGN SAKLCPGVCA YPFAVPAFIP GLKPVKSPNG DVGVDGMISV IAHEIAELAT NPLVNAWYAG PDPVAPVEIA DLCEGIYGTG GGGSYTGQML
301: NDHSGATYNV NGIRRRYLIQ WLWSHVVSYC TGPNALD
Arabidopsis Description
EXL3Protein EXORDIUM-like 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHM9]
SUBAcon: [extracellular,vacuole]
SUBAcon: [extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.