Factsheet for Solyc03g122030.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g073920.2.1
Solyc01g099670.2.1
Solyc01g104220.2.1
Solyc01g109220.2.1
Solyc02g067030.2.1
Solyc02g067920.2.1
Solyc02g091300.2.1
Solyc02g092240.2.1
Solyc03g043640.2.1
Solyc03g078620.1.1
Solyc03g110990.1.1
Solyc03g111180.2.1
Solyc04g055130.1.1
Solyc04g055140.1.1
Solyc04g055150.1.1
Solyc05g046390.2.1
Solyc05g054130.2.1
Solyc05g054820.1.1
Solyc06g065990.1.1
Solyc06g066000.1.1
Solyc06g066300.1.1
Solyc06g071930.1.1
Solyc06g076320.1.1
Solyc06g083430.1.1
Solyc09g007250.2.1
Solyc09g015180.2.1
Solyc09g059220.1.1
Solyc10g045640.1.1
Solyc10g084350.1.1
Solyc10g086010.1.1
Solyc11g012400.1.1
Solyc12g096540.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G54060.1	Solyc01g109220.2.1	AT1G49410.1	21798944
AT1G54060.1	Solyc01g104220.2.1	AT1G57620.1	21798944
AT1G54060.1	Solyc10g045640.1.1	AT1G57620.1	21798944
AT1G54060.1	Solyc06g076320.1.1	AT2G29125.1	21798944
AT1G54060.1	Solyc05g046390.2.1	AT2G31490.1	21798944
AT1G54060.1	Solyc09g059220.1.1	AT2G31490.1	21798944
AT1G54060.1	Solyc01g073920.2.1	AT2G32840.1	21798944
AT1G54060.1	Solyc09g007250.2.1	AT3G09630.1	21798944
AT1G54060.1	Solyc10g084350.1.1	AT3G09630.1	21798944
AT1G54060.1	Solyc10g086010.1.1	AT3G09630.1	21798944
AT1G54060.1	Solyc06g083430.1.1	AT3G24860.1	21798944
AT1G54060.1	Solyc02g067030.2.1	AT3G29160.1	21798944
AT1G54060.1	Solyc05g054130.2.1	AT4G17270.1	21798944
AT1G54060.1	Solyc11g012400.1.1	AT4G17270.1	21798944
AT1G54060.1	Solyc06g065990.1.1	AT4G32260.1	21798944
AT1G54060.1	Solyc06g066000.1.1	AT4G32260.1	21798944
AT1G54060.1	Solyc09g007250.2.1	AT5G02870.1	21798944
AT1G54060.1	Solyc10g084350.1.1	AT5G02870.1	21798944
AT1G54060.1	Solyc10g086010.1.1	AT5G02870.1	21798944
AT1G54060.1	Solyc02g091300.2.1	AT5G17450.1	21798944
AT1G54060.1	Solyc03g043640.2.1	AT5G17450.1	21798944
AT1G54060.1	Solyc01g099670.2.1	AT5G41520.1	21798944
AT1G54060.1	Solyc12g096540.1.1	AT5G41520.1	21798944
AT1G54060.1	Solyc03g110990.1.1	AT5G50335.1	21798944
AT1G54060.1	Solyc06g071930.1.1	AT5G50335.1	21798944
AT1G54060.1	Solyc03g111180.2.1	AT5G60160.1	21798944
AT1G54060.1	Solyc06g066300.1.1	AT5G62030.1	21798944
AT3G14180.1	Solyc02g067920.2.1	AT3G01690.1	21798944
AT3G14180.1	Solyc09g015180.2.1	AT3G08780.1	21798944
AT3G14180.1	Solyc09g007250.2.1	AT3G09630.1	21798944
AT3G14180.1	Solyc10g084350.1.1	AT3G09630.1	21798944
AT3G14180.1	Solyc10g086010.1.1	AT3G09630.1	21798944
AT3G14180.1	Solyc05g054820.1.1	AT3G55150.1	21798944
AT3G14180.1	Solyc03g078620.1.1	AT5G10210.1	21798944
AT3G14180.1	Solyc04g055130.1.1	AT5G10210.1	21798944
AT3G14180.1	Solyc04g055140.1.1	AT5G10210.1	21798944
AT3G14180.1	Solyc04g055150.1.1	AT5G10210.1	21798944
AT3G14180.1	Solyc02g092240.2.1	AT5G67620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400088401	Potato	nucleus, plastid	96.42	93.83
VIT_09s0002g00720.t01	Wine grape	nucleus	67.22	67.03
KRH06239	Soybean	nucleus	64.19	62.97
KRH47662	Soybean	nucleus, plastid	63.36	62.5
CDX75751	Canola	nucleus	51.24	50.0
CDY39099	Canola	nucleus	41.87	47.95
CDY39101	Canola	nucleus, plastid	40.22	47.87
Bra021534.1-P	Field mustard	nucleus, plastid	40.5	47.42
CDY33246	Canola	nucleus	39.94	47.39
Bra021536.1-P	Field mustard	nucleus	39.67	47.06
AT3G14180.1	Thale cress	nucleus	54.82	44.92
CDY61477	Canola	nucleus, plastid	37.19	44.85
Bra037960.1-P	Field mustard	nucleus, plastid	36.36	43.85
CDY02487	Canola	nucleus, plastid	36.36	42.86
CDY51405	Canola	nucleus	14.88	42.52
CDY08216	Canola	nucleus	38.29	42.38
Solyc06g051120.2.1	Tomato	nucleus	29.75	42.19
Bra014370.1-P	Field mustard	nucleus	38.57	41.79
AT1G54060.1	Thale cress	nucleus	42.98	40.73
CDY26148	Canola	nucleus, plastid	39.67	40.34
Bra030909.1-P	Field mustard	nucleus	14.05	39.84
GSMUA_Achr8P23650_001	Banana	nucleus	36.36	38.71
Solyc02g076810.2.1	Tomato	cytosol	28.93	37.37
GSMUA_Achr9P14340_001	Banana	nucleus	35.81	35.91
Solyc12g010890.1.1	Tomato	nucleus	29.2	32.82
Zm00001d025514_P001	Maize	nucleus	34.99	32.4
Os04t0445600-00	Rice	nucleus	37.19	32.37
TraesCS2A01G313300.1	Wheat	nucleus, plastid	36.91	32.21
TraesCS2D01G311800.1	Wheat	nucleus, plastid	36.64	32.2
TraesCS2B01G332100.1	Wheat	nucleus, plastid	36.64	31.97
Zm00001d003549_P001	Maize	nucleus	33.88	31.95
GSMUA_Achr3P05880_001	Banana	nucleus	35.26	31.68
EES12241	Sorghum	nucleus	35.26	31.37
TraesCS6A01G198600.1	Wheat	nucleus, plastid	31.41	30.81
CDY33093	Canola	cytosol, plastid	35.81	29.75
Os02t0565000-01	Rice	nucleus	34.16	29.59
TraesCS6D01G184500.2	Wheat	nucleus	32.78	28.61
TraesCS6B01G230000.1	Wheat	nucleus	32.78	28.61
HORVU6Hr1G050140.1	Barley	nucleus, plastid	32.51	28.23
Zm00001d016876_P001	Maize	nucleus, plastid	31.13	28.11
Zm00001d010753_P001	Maize	nucleus	24.52	27.13
Solyc07g055100.2.1	Tomato	nucleus, plastid	30.58	25.87
KXG30464	Sorghum	nucleus, plastid	30.03	25.83
Solyc12g043090.1.1	Tomato	nucleus	24.52	23.73
Solyc05g018350.2.1	Tomato	nucleus	22.04	22.66
HORVU2Hr1G077940.1	Barley	cytosol, nucleus, plastid	13.22	21.43
Zm00001d042917_P001	Maize	golgi, plasma membrane	25.34	13.86

Protein Annotations

EnsemblPlants:Solyc03g122030.1.1	EnsemblPlantsGene:Solyc03g122030.1	PANTHER:PTHR31307	PANTHER:PTHR31307:SF4	PFAM:PF13837	SEG:seg
UniParc:UPI00027657CA	UniProt:K4BN01	MapMan:15.5.20	:	:	:

Description

No Description!

Coordinates

chr3:+:70024275..70025366

Molecular Weight (calculated)

40269.2 Da

IEP (calculated)

9.901

GRAVY (calculated)

-0.998

Length

363 amino acids

Sequence
(BLAST)

001: MENDEETQSG GSGSPESPRS NGRITVTVAS APPQNTLTLA LPIQQSRPAG ASGGGGGSGG GREDCWSEEA TAVLIEAWGE RYMELSRGNL KQKHWKDVAD
101: IVSSREDYRK TPKTDIQCKN RIDTVKKKYK LEKSKIAAGQ GPSKWPFFDK LDMLIGPTAK INPTVAAGPS NLYSGNQHVP MGIPMGVRSL PQLRQHQQLQ
201: KQKQPSRKRP HMDSDTSESE SEPDLSPAST DSFPPGTFQK KRPRFQKEML NSSALRQGGI GEASGNKNWG NSVRELTQAI LKFGEAYEQT ETAKLHQMVE
301: MEKQRMKFAK DMELQRMQFF MNTQLEIAQL KHRRSENSNH HSNNHAAAAS NHNNNNNNSD NSI

Best Arabidopsis Sequence Match ( AT3G14180.1 )
(BLAST)

001: MEDDEDIRSQ GSDSPDPSSS PPAGRITVTV ASAGPPSYSL TPPGNSSQKD PDALALALLP IQASGGGNNS SGRPTGGGGR EDCWSEAATA VLIDAWGERY
101: LELSRGNLKQ KHWKEVAEIV SSREDYGKIP KTDIQCKNRI DTVKKKYKQE KVRIANGGGR SRWVFFDKLD RLIGSTAKIP TATSGVSGPV GGLHKIPMGI
201: PMGSRSNLYH QQAKAATPPF NNLDRLIGAT ARVSAASFGG SGGGGGGGSV NVPMGIPMSS RSAPFGQQGR TLPQQGRTLP QQQQQGMMVK RCSESKRWRF
301: RKRNASDSDS ESEAAMSDDS GDSLPPPPLS KRMKTEEKKK QDGDGVGNKW RELTRAIMRF GEAYEQTENA KLQQVVEMEK ERMKFLKELE LQRMQFFVKT
401: QLEISQLKQQ HGRRMGNTSN DHHHSRKNNI NAIVNNNNDL GNN

Arabidopsis Description

ASIL2ASIL2 [Source:UniProtKB/TrEMBL;Acc:A0A178V8Z7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.