Factsheet for Solyc06g065990.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g066000.1.1	Tomato	plastid	95.07	95.07
PGSC0003DMT400052738	Potato	plastid	94.62	94.62
GSMUA_Achr8P22550_001	Banana	endoplasmic reticulum, vacuole	40.81	75.83
KRH61755	Soybean	plastid	64.13	66.51
KRH52420	Soybean	plastid	63.68	66.05
CDX68826	Canola	plastid	63.23	65.28
VIT_04s0008g05590.t01	Wine grape	plastid	62.78	65.12
Bra011329.1-P	Field mustard	plastid	64.13	64.71
CDX75228	Canola	plastid	64.13	64.71
AT4G32260.1	Thale cress	plastid	61.88	63.01
EER92459	Sorghum	plastid	54.26	56.54
Os03t0278900-01	Rice	plastid	52.47	55.45
TraesCS4B01G204500.1	Wheat	golgi, plastid	52.02	54.98
TraesCS4A01G099800.1	Wheat	plastid	51.57	54.5
TraesCS4D01G205400.1	Wheat	plastid	51.57	54.5
Zm00001d047789_P001	Maize	plastid	52.47	54.17
HORVU4Hr1G058970.6	Barley	plastid	51.57	48.94

Protein Annotations

MapMan:1.1.9.1.3	InterPro:ATP_synth_b'	InterPro:ATP_synth_b/b'su_bac/chlpt	ncoils:Coil	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0006810	GO:GO:0006811
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015078	GO:GO:0015986
GO:GO:0015992	GO:GO:0016020	GO:GO:0016021	GO:GO:0045263	UniProt:K4C7M7	HAMAP:MF_01398
HAMAP:MF_01399	PFAM:PF00430	PANTHER:PTHR33445	EnsemblPlantsGene:Solyc06g065990.1	EnsemblPlants:Solyc06g065990.1.1	UniParc:UPI0002765B95
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6:-:41359867..41360538

Molecular Weight (calculated)

24413.8 Da

IEP (calculated)

5.505

GRAVY (calculated)

-0.079

Length

223 amino acids

Sequence
(BLAST)

001: MANMIMSSSK ALITSSSSTI PSSPRFKLSL TQIPFPKLPL PRSPKSLETL SIPSTLKSIS VILASSLAIA PPSLAEEIEK ASLFDFNLTL PTMMAEFLFL
101: MFALDKIYFS PLGKFMDERD SAIKEKLSSV KDTSTEVKQL EDQAAAIMKA ARAEISAALN KMKKETQQEV EQKIAEGRKK VEAELLEALA SLENQKEETM
201: KSLDSQIAAL SDEIVKKVLP ASN

Best Arabidopsis Sequence Match ( AT4G32260.1 )
(BLAST)

001: MAANSIMASS KPLISLSSNQ QPNRVQIPKF AKLPQIPKSL TSSTDLRSKA LSLSSATAKS LALIAAFAPP SMAEAMEKAQ LFDFNLTLPI IVVEFLFLMF
101: ALDKVYYSPL GNFMDQRDAS IKEKLASVKD TSTEVKELDE QAAAVMRAAR AEIAAALNKM KKETQVEVEE KLAEGRKKVE EELKEALASL ESQKEETIKA
201: LDSQIAALSE DIVKKVLPS

Arabidopsis Description

PDE334 [Source:UniProtKB/TrEMBL;Acc:A0A178V017]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.