Factsheet for Os03t0278900-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 1

Predictors

GFP

MS/MS

Papers

plastid: 17189339
nucleus: 19621931
plastid: 21433289
extracellular: 23159799
plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 23159799 doi

SG Kim, Y Wang, KH Lee, ZY Park, J Park, J Wu, SJ Kwon, YH Lee, GK Agrawal, R Rakwal, ST Kim, KY Kang

Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju, 660-701, South Korea.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

msms PMID: 17189339 doi

T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky

Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G204500.1	Wheat	golgi, plastid	81.52	81.52
TraesCS4D01G205400.1	Wheat	plastid	81.04	81.04
TraesCS4A01G099800.1	Wheat	plastid	80.57	80.57
GSMUA_Achr8P22550_001	Banana	endoplasmic reticulum, vacuole	45.5	80.0
Zm00001d047789_P001	Maize	plastid	79.62	77.78
EER92459	Sorghum	plastid	78.67	77.57
HORVU4Hr1G058970.6	Barley	plastid	81.04	72.77
KRH52420	Soybean	plastid	54.98	53.95
KRH61755	Soybean	plastid	54.98	53.95
VIT_04s0008g05590.t01	Wine grape	plastid	53.55	52.56
AT4G32260.1	Thale cress	plastid	54.5	52.51
PGSC0003DMT400052738	Potato	plastid	55.45	52.47
Solyc06g066000.1.1	Tomato	plastid	55.45	52.47
Solyc06g065990.1.1	Tomato	nucleus, plastid	55.45	52.47
PGSC0003DMT400052777	Potato	plastid	55.45	52.47
CDX68826	Canola	plastid	51.66	50.46
CDX75228	Canola	plastid	51.66	49.32
Bra011329.1-P	Field mustard	plastid	51.66	49.32

Protein Annotations

MapMan:1.1.9.1.3	EntrezGene:4332431	ProteinID:ABF95289.1	EMBL:AK066019	EMBL:AK105925	InterPro:ATP_synth_b'
InterPro:ATP_synth_b/b'su_bac/chlpt	EMBL:AY224460	ProteinID:BAF11644.1	ProteinID:BAS83550.1	ncoils:Coil	GO:GO:0003674
GO:GO:0005215	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0006810	GO:GO:0006811	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009534	GO:GO:0009535	GO:GO:0009536
GO:GO:0009579	GO:GO:0009605	GO:GO:0009607	GO:GO:0009719	GO:GO:0009735	GO:GO:0009941
GO:GO:0009987	GO:GO:0015078	GO:GO:0015986	GO:GO:0016020	GO:GO:0016021	GO:GO:0019904
GO:GO:0042742	GO:GO:0045263	HAMAP:MF_01398	HAMAP:MF_01399	EnsemblPlantsGene:Os03g0278900	EnsemblPlants:Os03t0278900-01
PFAM:PF00430	PANTHER:PTHR33445	UniProt:Q84PA4	TMHMM:TMhelix	UniParc:UPI000005F8BD	RefSeq:XP_015630476.1
SEG:seg	:	:	:	:	:

Description

ATPase, F0 complex, subunit B/B', bacterial and chloroplast family protein. (Os03t0278900-01)

Coordinates

chr3:-:9491526..9492494

Molecular Weight (calculated)

22730.7 Da

IEP (calculated)

5.505

GRAVY (calculated)

-0.075

Length

211 amino acids

Sequence
(BLAST)

001: MATAMMAATA TSCSPRRAPV VASSSVQPPR RQQQQQPRRG LKQLPGLVAT AAVAVAAAPL PALAEQMEKA ALFDFNLTLP LIATEFLLLM VALDKLYFTP
101: LGKFMDERDA KIRAELGGVK DASEEVRQLE EQAAAVLKAA RAEIAAALNK MKKETTQELE AKLDEGRRRV EAELVEALAN LEAQKEEAVK ALDAQIASLS
201: DEIVKKVLPS A

Best Arabidopsis Sequence Match ( AT4G32260.1 )
(BLAST)

001: MAANSIMASS KPLISLSSNQ QPNRVQIPKF AKLPQIPKSL TSSTDLRSKA LSLSSATAKS LALIAAFAPP SMAEAMEKAQ LFDFNLTLPI IVVEFLFLMF
101: ALDKVYYSPL GNFMDQRDAS IKEKLASVKD TSTEVKELDE QAAAVMRAAR AEIAAALNKM KKETQVEVEE KLAEGRKKVE EELKEALASL ESQKEETIKA
201: LDSQIAALSE DIVKKVLPS

Arabidopsis Description

PDE334 [Source:UniProtKB/TrEMBL;Acc:A0A178V017]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.