Factsheet for Solyc06g066000.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20363867
plastid: 22908117
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400052777	Potato	plastid	100.0	100.0
Solyc06g065990.1.1	Tomato	nucleus, plastid	95.07	95.07
GSMUA_Achr8P22550_001	Banana	endoplasmic reticulum, vacuole	41.26	76.67
KRH61755	Soybean	plastid	65.02	67.44
KRH52420	Soybean	plastid	64.57	66.98
CDX68826	Canola	plastid	64.57	66.67
VIT_04s0008g05590.t01	Wine grape	plastid	63.68	66.05
Bra011329.1-P	Field mustard	plastid	64.57	65.16
CDX75228	Canola	plastid	64.57	65.16
AT4G32260.1	Thale cress	plastid	62.33	63.47
EER92459	Sorghum	plastid	54.71	57.01
TraesCS4B01G204500.1	Wheat	golgi, plastid	52.91	55.92
Os03t0278900-01	Rice	plastid	52.47	55.45
TraesCS4A01G099800.1	Wheat	plastid	52.47	55.45
TraesCS4D01G205400.1	Wheat	plastid	52.47	55.45
Zm00001d047789_P001	Maize	plastid	52.91	54.63
HORVU4Hr1G058970.6	Barley	plastid	52.47	49.79

Protein Annotations

MapMan:1.1.9.1.3	Gene3D:1.20.120.20	InterPro:ATP_synth_b'	InterPro:ATP_synth_b/b'su_bac/chlpt	ncoils:Coil	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0006810
GO:GO:0006811	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015078
GO:GO:0015986	GO:GO:0015992	GO:GO:0016020	GO:GO:0016021	GO:GO:0045263	UniProt:K4C7M8
HAMAP:MF_01398	HAMAP:MF_01399	PFAM:PF00430	PANTHER:PTHR33445	EnsemblPlantsGene:Solyc06g066000.1	EnsemblPlants:Solyc06g066000.1.1
UniParc:UPI0002765B96	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6:-:41363091..41363762

Molecular Weight (calculated)

24439.9 Da

IEP (calculated)

5.505

GRAVY (calculated)

-0.056

Length

223 amino acids

Sequence
(BLAST)

001: MANMMMSSSK VLITSSSSTI PPSPRFKLSL TQIPFPKLPL PKSPKSLETL SIPSTLKSIS VILASSLAMA PPSLAEEIEK ASLFDFNLTL PIMMAEFLFL
101: MFALDKIYFS PLGKFMDERD SAIKEKLSSV KDTSAEVKQL EDQAAAIMKA ARAEISAALN KMKKETQQEV EQKIAEGRKK VEAELQEALA SLESQKEETI
201: KSLDSQIAAL SDEIVKKVLP VSN

Best Arabidopsis Sequence Match ( AT4G32260.1 )
(BLAST)

001: MAANSIMASS KPLISLSSNQ QPNRVQIPKF AKLPQIPKSL TSSTDLRSKA LSLSSATAKS LALIAAFAPP SMAEAMEKAQ LFDFNLTLPI IVVEFLFLMF
101: ALDKVYYSPL GNFMDQRDAS IKEKLASVKD TSTEVKELDE QAAAVMRAAR AEIAAALNKM KKETQVEVEE KLAEGRKKVE EELKEALASL ESQKEETIKA
201: LDSQIAALSE DIVKKVLPS

Arabidopsis Description

PDE334 [Source:UniProtKB/TrEMBL;Acc:A0A178V017]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.