Factsheet for VIT_04s0008g05590.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P22550_001	Banana	endoplasmic reticulum, vacuole	42.33	75.83
KRH52420	Soybean	plastid	64.65	64.65
CDX68826	Canola	plastid	64.19	63.89
PGSC0003DMT400052777	Potato	plastid	66.05	63.68
Solyc06g066000.1.1	Tomato	plastid	66.05	63.68
KRH61755	Soybean	plastid	63.26	63.26
PGSC0003DMT400052738	Potato	plastid	65.58	63.23
Solyc06g065990.1.1	Tomato	nucleus, plastid	65.12	62.78
Bra011329.1-P	Field mustard	plastid	64.19	62.44
CDX75228	Canola	plastid	64.19	62.44
AT4G32260.1	Thale cress	plastid	61.86	60.73
TraesCS4A01G099800.1	Wheat	plastid	53.02	54.03
TraesCS4B01G204500.1	Wheat	golgi, plastid	53.02	54.03
EER92459	Sorghum	plastid	53.49	53.74
Os03t0278900-01	Rice	plastid	52.56	53.55
TraesCS4D01G205400.1	Wheat	plastid	52.56	53.55
Zm00001d047789_P001	Maize	plastid	53.02	52.78
HORVU4Hr1G058970.6	Barley	plastid	52.56	48.09

Protein Annotations

MapMan:1.1.9.1.3	EntrezGene:100250997	wikigene:100250997	EntrezGene:109122511	EMBL:AM477077	InterPro:ATP_synth_b'
InterPro:ATP_synth_b/b'su_bac/chlpt	ProteinID:CAN81656	ProteinID:CAN81656.1	ProteinID:CCB46812	ProteinID:CCB46812.1	ncoils:Coil
UniProt:F6H3H7	EMBL:FN595231	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006139	GO:GO:0006810	GO:GO:0006811	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0015078	GO:GO:0015986	GO:GO:0015992	GO:GO:0016020
GO:GO:0016021	GO:GO:0045263	EntrezGene:LOC100250997	wikigene:LOC100250997	HAMAP:MF_01398	HAMAP:MF_01399
PFAM:PF00430	PANTHER:PTHR33445	TIGR:TC62259	UniParc:UPI00015C856C	ArrayExpress:VIT_04s0008g05590	EnsemblPlantsGene:VIT_04s0008g05590
EnsemblPlants:VIT_04s0008g05590.t01	unigene:Vvi.9429	RefSeq:XP_002285183	RefSeq:XP_002285183.1	RefSeq:XP_019075060.1	SEG:seg

Description

No Description!

Coordinates

chr4:+:5066705..5067497

Molecular Weight (calculated)

23439.0 Da

IEP (calculated)

9.400

GRAVY (calculated)

0.046

Length

215 amino acids

Sequence
(BLAST)

001: MANMIVASTK TLITSSPSLP PTTTTPRPKF HLPHISLPRL PKLLSLKSAA LIAATTTTSL SLAPLPSMAE EIEKAALFEF NLTLPIMMAQ FLLLMVALDK
101: IYYSPLGKFM DERNAAIKEK LNSVKDTSGE VKQLEEQAAA VMKAVRAEIS AALNQMKKET AAEVEMKLAE GRKKVEAELQ EALAVLEKQK EDTIKALDSQ
201: IAALSQQIVN KVLPL

Best Arabidopsis Sequence Match ( AT4G32260.1 )
(BLAST)

001: MAANSIMASS KPLISLSSNQ QPNRVQIPKF AKLPQIPKSL TSSTDLRSKA LSLSSATAKS LALIAAFAPP SMAEAMEKAQ LFDFNLTLPI IVVEFLFLMF
101: ALDKVYYSPL GNFMDQRDAS IKEKLASVKD TSTEVKELDE QAAAVMRAAR AEIAAALNKM KKETQVEVEE KLAEGRKKVE EELKEALASL ESQKEETIKA
201: LDSQIAALSE DIVKKVLPS

Arabidopsis Description

PDE334 [Source:UniProtKB/TrEMBL;Acc:A0A178V017]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.